Variant report

Variant	rs11726744
Chromosome Location	chr4:85502950-85502951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr4:85502895-85502958	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:85502738..85504984-chr4:89443554..89446248,2	MCF-7	breast:
2	chr4:85502040..85503773-chr4:85544764..85547239,2	MCF-7	breast:
3	chr4:85483371..85486524-chr4:85499401..85503831,3	MCF-7	breast:
4	chr4:85502095..85504944-chr4:85602108..85604379,3	MCF-7	breast:

Variant related genes	Relation type
CDS1	TF binding region
ENSG00000163625	Chromatin interaction
ENSG00000145337	Chromatin interaction
ENSG00000138641	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10516725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725803	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737002	1.00[AMR][1000 genomes]
rs11939816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944727	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944769	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17368157	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17375734	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376048	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376293	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17376461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap]
rs17376946	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap]
rs36068434	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41524654	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73831542	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699828	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85489800-85503400	Weak transcription	Lung	lung
2	chr4:85495600-85503400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:85495600-85503400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:85495800-85503400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:85500800-85503000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:85500800-85503200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:85501000-85503000	Weak transcription	Brain Anterior Caudate	brain
8	chr4:85501000-85503200	Weak transcription	NHEK	skin
9	chr4:85501000-85503400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:85502000-85503000	Enhancers	Fetal Heart	heart
11	chr4:85502200-85503200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr4:85502200-85503200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:85502400-85503000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr4:85502400-85503000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr4:85502400-85503000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
16	chr4:85502400-85503200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:85502400-85503200	Enhancers	Fetal Intestine Small	intestine
18	chr4:85502400-85503400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:85502400-85503400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:85502400-85503400	Enhancers	Placenta	Placenta
21	chr4:85502600-85503000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
22	chr4:85502600-85503200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr4:85502600-85503200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr4:85502600-85503200	Enhancers	Fetal Intestine Large	intestine
25	chr4:85502600-85503400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:85502800-85503000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
27	chr4:85502800-85503000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
28	chr4:85502800-85503000	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr4:85502800-85503000	Enhancers	HMEC	breast
30	chr4:85502800-85503200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
31	chr4:85502800-85503200	Bivalent Enhancer	HepG2	liver

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