Variant report

Variant	rs17368157
Chromosome Location	chr4:85638024-85638025
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85503976..85505583-chr4:85636428..85639307,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163624	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10516725	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11726731	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726744	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11731505	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11733678	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939816	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1443075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17009337	1.00[ASN][1000 genomes]
rs17367317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap]
rs17367775	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368458	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap]
rs17376048	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap]
rs17376090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap]
rs17376293	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376489	0.94[EUR][1000 genomes]
rs17376946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377666	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34548715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35767732	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41524654	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap]
rs4569746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv527581	chr4:85637635-85640591	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85587800-85648400	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:85603800-85643800	Weak transcription	Stomach Mucosa	stomach
3	chr4:85604400-85674800	Weak transcription	Small Intestine	intestine
4	chr4:85612600-85639600	Weak transcription	Fetal Heart	heart
5	chr4:85613400-85643000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:85613400-85646200	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:85613400-85646600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:85613400-85649400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr4:85613600-85650200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr4:85615000-85677600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:85616800-85646600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:85617000-85641800	Weak transcription	Psoas Muscle	Psoas
13	chr4:85619200-85726000	Weak transcription	Hela-S3	cervix
14	chr4:85619400-85639000	Strong transcription	Adipose Nuclei	Adipose
15	chr4:85619400-85646400	Strong transcription	Fetal Muscle Trunk	muscle
16	chr4:85619600-85638400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:85619600-85646400	Strong transcription	Liver	Liver
18	chr4:85620200-85640000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:85620200-85648000	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr4:85620800-85663400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:85623200-85640400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:85625000-85646600	Strong transcription	Placenta	Placenta
23	chr4:85625200-85641600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:85626800-85641600	Weak transcription	NHEK	skin
25	chr4:85626800-85641800	Weak transcription	HMEC	breast
26	chr4:85627800-85646800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr4:85628800-85641600	Weak transcription	Aorta	Aorta
28	chr4:85628800-85641600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr4:85628800-85641600	Weak transcription	Spleen	Spleen
30	chr4:85628800-85642000	Weak transcription	Gastric	stomach
31	chr4:85629200-85662400	Weak transcription	Colonic Mucosa	Colon
32	chr4:85630000-85638600	Weak transcription	Ovary	ovary
33	chr4:85630000-85641200	Weak transcription	NHLF	lung
34	chr4:85630000-85641400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr4:85630000-85641600	Weak transcription	Pancreas	Pancrea
36	chr4:85630000-85641800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr4:85630000-85656400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:85630000-85659000	Weak transcription	Right Ventricle	heart
39	chr4:85630200-85639800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr4:85630200-85639800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr4:85630200-85641400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr4:85630200-85641600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:85630200-85656400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr4:85630800-85645600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr4:85631200-85641600	Weak transcription	Esophagus	oesophagus
46	chr4:85631600-85639600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr4:85632400-85641200	Weak transcription	Brain Angular Gyrus	brain
48	chr4:85632600-85639800	Strong transcription	Fetal Intestine Small	intestine
49	chr4:85632600-85641600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr4:85632600-85649000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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