Variant report

Variant	rs17377352
Chromosome Location	chr4:85729166-85729167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10516725	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11726731	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733678	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939816	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1443075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17009337	1.00[ASN][1000 genomes]
rs17367775	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368458	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376048	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17376090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs17376293	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376489	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17376946	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377338	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377666	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34548715	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35767732	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4569746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85683800-85732000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr4:85696400-85757000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:85697400-85772800	Weak transcription	Small Intestine	intestine
4	chr4:85701600-85783000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:85702200-85732200	Weak transcription	Spleen	Spleen
6	chr4:85704200-85739800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:85705200-85735200	Weak transcription	A549	lung
8	chr4:85705400-85770000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:85708600-85731000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:85708600-85777400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:85708800-85741200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:85709000-85731000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:85709000-85769600	Weak transcription	Right Ventricle	heart
14	chr4:85709000-85781600	Weak transcription	Esophagus	oesophagus
15	chr4:85709200-85749000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:85709200-85770200	Weak transcription	Psoas Muscle	Psoas
17	chr4:85722200-85733600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:85722200-85787600	Weak transcription	Gastric	stomach
19	chr4:85722400-85731000	Weak transcription	HepG2	liver
20	chr4:85722400-85751800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:85722400-85762600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:85722600-85731000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:85722800-85730400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr4:85723000-85729400	Weak transcription	Left Ventricle	heart
25	chr4:85723000-85729600	Weak transcription	HMEC	breast
26	chr4:85723000-85731000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr4:85723000-85742000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr4:85723000-85751200	Weak transcription	Fetal Heart	heart
29	chr4:85723000-85754800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:85723000-85821000	Weak transcription	Pancreas	Pancrea
31	chr4:85723200-85749600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:85723200-85770400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr4:85723200-85777000	Weak transcription	Colon Smooth Muscle	Colon
34	chr4:85723400-85729400	Weak transcription	Ovary	ovary
35	chr4:85723400-85738800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr4:85723800-85730200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr4:85723800-85731000	Weak transcription	Lung	lung
38	chr4:85724000-85749400	Weak transcription	Fetal Intestine Small	intestine
39	chr4:85724000-85752000	Weak transcription	Fetal Stomach	stomach
40	chr4:85724000-85781400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:85724000-85786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:85724200-85761600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr4:85724200-85769600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr4:85724400-85729200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr4:85724600-85729400	Weak transcription	Liver	Liver
46	chr4:85724600-85729400	Weak transcription	Fetal Intestine Large	intestine
47	chr4:85724600-85729400	Weak transcription	Fetal Muscle Leg	muscle
48	chr4:85724600-85729600	Weak transcription	Fetal Lung	lung
49	chr4:85724600-85730000	Weak transcription	Adipose Nuclei	Adipose
50	chr4:85724600-85730400	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links