Variant report

Variant	rs17368902
Chromosome Location	chr4:85739804-85739805
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85738604..85741304-chr4:85886468..85889503,3	MCF-7	breast:
2	chr4:85735628..85737387-chr4:85739794..85742256,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180769	Chromatin interaction
ENSG00000163625	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11726731	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733678	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17009337	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17367775	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368458	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376048	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17376090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17376293	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376489	0.94[EUR][1000 genomes]
rs17376946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377666	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34548715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35767732	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4569746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85696400-85757000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:85697400-85772800	Weak transcription	Small Intestine	intestine
3	chr4:85701600-85783000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:85705400-85770000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:85708600-85777400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:85708800-85741200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:85709000-85769600	Weak transcription	Right Ventricle	heart
8	chr4:85709000-85781600	Weak transcription	Esophagus	oesophagus
9	chr4:85709200-85749000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:85709200-85770200	Weak transcription	Psoas Muscle	Psoas
11	chr4:85722200-85787600	Weak transcription	Gastric	stomach
12	chr4:85722400-85751800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:85722400-85762600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:85723000-85742000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:85723000-85751200	Weak transcription	Fetal Heart	heart
16	chr4:85723000-85754800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:85723000-85821000	Weak transcription	Pancreas	Pancrea
18	chr4:85723200-85749600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:85723200-85770400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr4:85723200-85777000	Weak transcription	Colon Smooth Muscle	Colon
21	chr4:85724000-85749400	Weak transcription	Fetal Intestine Small	intestine
22	chr4:85724000-85752000	Weak transcription	Fetal Stomach	stomach
23	chr4:85724000-85781400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:85724000-85786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:85724200-85761600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr4:85724200-85769600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr4:85724600-85753000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr4:85727800-85783200	Weak transcription	Colonic Mucosa	Colon
29	chr4:85729800-85755800	Weak transcription	Ovary	ovary
30	chr4:85730800-85740000	Weak transcription	Fetal Lung	lung
31	chr4:85730800-85760400	Weak transcription	Fetal Kidney	kidney
32	chr4:85731400-85740200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr4:85731400-85740400	Weak transcription	Brain Anterior Caudate	brain
34	chr4:85731400-85749600	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:85731400-85751400	Weak transcription	Fetal Brain Female	brain
36	chr4:85731400-85769600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:85731400-85791600	Weak transcription	Lung	lung
38	chr4:85731600-85742200	Weak transcription	HepG2	liver
39	chr4:85731800-85769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr4:85732400-85741600	Weak transcription	Fetal Brain Male	brain
41	chr4:85732800-85748000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr4:85732800-85759000	Weak transcription	Brain Angular Gyrus	brain
43	chr4:85732800-85761200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr4:85733600-85753400	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr4:85734000-85743000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:85734000-85743800	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr4:85735000-85742200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr4:85735400-85743400	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr4:85735800-85777000	Weak transcription	Aorta	Aorta
50	chr4:85736200-85741000	Weak transcription	Muscle Satellite Cultured Cells	--

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