Variant report

Variant	rs17009337
Chromosome Location	chr4:85843244-85843245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10002152	1.00[ASN][1000 genomes]
rs11097036	1.00[ASN][1000 genomes]
rs11726731	1.00[ASN][1000 genomes]
rs11733678	1.00[ASN][1000 genomes]
rs11733881	1.00[CHB][hapmap];1.00[LWK][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11734281	1.00[ASN][1000 genomes]
rs11937574	1.00[ASN][1000 genomes]
rs13120826	1.00[ASN][1000 genomes]
rs13120830	1.00[ASN][1000 genomes]
rs13126594	1.00[ASN][1000 genomes]
rs17368157	1.00[ASN][1000 genomes]
rs17368458	1.00[ASN][1000 genomes]
rs17368902	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17376461	1.00[ASN][1000 genomes]
rs17376946	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17377338	1.00[ASN][1000 genomes]
rs17377352	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17377666	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34548715	1.00[ASN][1000 genomes]
rs35767732	1.00[ASN][1000 genomes]
rs4235074	1.00[ASN][1000 genomes]
rs4235075	1.00[ASN][1000 genomes]
rs4283651	1.00[ASN][1000 genomes]
rs4295250	1.00[ASN][1000 genomes]
rs4314278	1.00[ASN][1000 genomes]
rs4315777	1.00[ASN][1000 genomes]
rs4321625	1.00[ASN][1000 genomes]
rs4342179	1.00[ASN][1000 genomes]
rs4348084	1.00[ASN][1000 genomes]
rs4374618	1.00[ASN][1000 genomes]
rs4374619	1.00[ASN][1000 genomes]
rs4398517	1.00[ASN][1000 genomes]
rs4455405	1.00[ASN][1000 genomes]
rs4527465	1.00[ASN][1000 genomes]
rs4543102	1.00[ASN][1000 genomes]
rs4558866	1.00[CHB][hapmap]
rs4569746	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4597823	1.00[ASN][1000 genomes]
rs4613556	1.00[ASN][1000 genomes]
rs4693111	1.00[ASN][1000 genomes]
rs4693112	1.00[ASN][1000 genomes]
rs4693113	1.00[ASN][1000 genomes]
rs6812502	1.00[ASN][1000 genomes]
rs73831567	1.00[AMR][1000 genomes]
rs7655309	1.00[ASN][1000 genomes]
rs7662243	1.00[ASN][1000 genomes]
rs7674965	1.00[ASN][1000 genomes]
rs7694774	1.00[ASN][1000 genomes]
rs9685046	1.00[CHB][hapmap]
rs9884829	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv879515	chr4:85789940-85843244	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv508295	chr4:85822802-85885027	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85781800-85848600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:85798800-85873200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:85801400-85843800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:85809000-85872800	Weak transcription	A549	lung
5	chr4:85811800-85851200	Weak transcription	Esophagus	oesophagus
6	chr4:85812800-85843600	Weak transcription	HepG2	liver
7	chr4:85813000-85858800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:85816000-85852400	Weak transcription	Left Ventricle	heart
9	chr4:85821600-85858400	Weak transcription	Pancreas	Pancrea
10	chr4:85822600-85844800	Weak transcription	Placenta	Placenta
11	chr4:85825400-85848600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:85825400-85848600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:85825600-85848800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr4:85825600-85849000	Weak transcription	Fetal Intestine Large	intestine
15	chr4:85825600-85849000	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:85826200-85845400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:85826400-85849200	Weak transcription	Fetal Stomach	stomach
18	chr4:85827200-85848800	Weak transcription	Ovary	ovary
19	chr4:85829200-85850000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr4:85829200-85866200	Weak transcription	Spleen	Spleen
21	chr4:85834600-85845600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr4:85835000-85848400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:85835200-85848400	Weak transcription	Fetal Lung	lung
24	chr4:85835800-85843600	Weak transcription	Fetal Intestine Small	intestine
25	chr4:85837600-85845600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr4:85837600-85858400	Weak transcription	Fetal Brain Female	brain
27	chr4:85837600-85859200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr4:85837800-85845600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:85837800-85849800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr4:85837800-85849800	Weak transcription	Fetal Kidney	kidney
31	chr4:85837800-85853200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr4:85837800-85858000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:85838000-85844000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr4:85838200-85848400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr4:85838200-85848600	Weak transcription	Brain Germinal Matrix	brain
36	chr4:85838400-85843800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr4:85838400-85853800	Weak transcription	Fetal Heart	heart
38	chr4:85838600-85843800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:85838600-85848600	Weak transcription	Aorta	Aorta
40	chr4:85838600-85858600	Weak transcription	Liver	Liver
41	chr4:85838600-85858600	Weak transcription	Psoas Muscle	Psoas
42	chr4:85839200-85846600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr4:85839400-85844000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr4:85839600-85858400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr4:85839800-85845400	Weak transcription	Brain Hippocampus Middle	brain
46	chr4:85839800-85845400	Weak transcription	Brain Substantia Nigra	brain
47	chr4:85839800-85848600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr4:85840000-85845800	Weak transcription	Fetal Brain Male	brain
49	chr4:85840200-85845400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr4:85840200-85848800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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