Variant report

Variant	rs35767732
Chromosome Location	chr4:85587499-85587500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10516725	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11726731	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11731505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs11733678	1.00[ASN][1000 genomes]
rs11733881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939816	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1443075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17009337	1.00[ASN][1000 genomes]
rs17367317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs17367775	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368458	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs17376048	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17376090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs17376293	1.00[ASW][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376489	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17376946	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377338	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377352	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377666	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34548715	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41524654	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs4569746	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85529600-85587600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:85564800-85587800	Weak transcription	Fetal Kidney	kidney
3	chr4:85568800-85589600	Weak transcription	Brain Angular Gyrus	brain
4	chr4:85571000-85588800	Weak transcription	Left Ventricle	heart
5	chr4:85571000-85592400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:85572200-85587800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:85573200-85588600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:85577200-85587800	Weak transcription	HSMMtube	muscle
9	chr4:85577600-85592400	Weak transcription	Aorta	Aorta
10	chr4:85578200-85589400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:85579000-85589400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr4:85579400-85590200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:85579600-85590400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:85579800-85589400	Weak transcription	Fetal Brain Female	brain
15	chr4:85580400-85589400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:85580800-85587600	Weak transcription	HSMM	muscle
17	chr4:85581400-85589200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr4:85581800-85588000	Weak transcription	Placenta	Placenta
19	chr4:85581800-85593200	Weak transcription	Right Ventricle	heart
20	chr4:85581800-85598200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:85581800-85598200	Weak transcription	Esophagus	oesophagus
22	chr4:85581800-85599000	Weak transcription	Spleen	Spleen
23	chr4:85582000-85589400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:85582000-85591000	Weak transcription	Ovary	ovary
25	chr4:85582000-85592200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr4:85582000-85593000	Weak transcription	Colonic Mucosa	Colon
27	chr4:85582000-85593200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr4:85582000-85595000	Weak transcription	NHLF	lung
29	chr4:85582000-85596200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:85582000-85598200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr4:85582200-85590800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr4:85582600-85591400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr4:85582800-85590000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr4:85582800-85593000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr4:85582800-85603000	Weak transcription	Small Intestine	intestine
36	chr4:85583000-85587600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:85583000-85589000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:85583000-85598000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr4:85583200-85596800	Weak transcription	Fetal Heart	heart
40	chr4:85583400-85591200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr4:85583800-85593200	Weak transcription	Gastric	stomach
42	chr4:85583800-85593200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr4:85584000-85590400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr4:85584000-85593000	Weak transcription	HepG2	liver
45	chr4:85584200-85591200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr4:85584200-85593800	Weak transcription	Fetal Intestine Small	intestine
47	chr4:85585000-85587800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr4:85585000-85593000	Weak transcription	Brain Substantia Nigra	brain
49	chr4:85585200-85588000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:85585200-85590000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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