Variant report

Variant	rs17376048
Chromosome Location	chr4:85543987-85543988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85541610..85544476-chr4:85547314..85549539,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10516725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721913	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725803	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726744	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731505	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733881	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap]
rs11939816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944727	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944769	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17368157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap]
rs17368902	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17375734	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376293	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17376461	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17376946	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17377352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs35023321	0.89[EUR][1000 genomes]
rs36068434	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41524654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4569746	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs73831542	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699828	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830333	chr4:85520643-85545644	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85515400-85544400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:85518600-85574800	Weak transcription	Stomach Mucosa	stomach
3	chr4:85520400-85559400	Weak transcription	Fetal Heart	heart
4	chr4:85525000-85564200	Weak transcription	Placenta	Placenta
5	chr4:85526800-85583000	Weak transcription	Gastric	stomach
6	chr4:85528200-85548200	Weak transcription	Colonic Mucosa	Colon
7	chr4:85528400-85564000	Weak transcription	Fetal Kidney	kidney
8	chr4:85529400-85581600	Weak transcription	Ovary	ovary
9	chr4:85529600-85587600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:85532200-85544200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:85532400-85556800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:85532400-85571200	Weak transcription	Pancreas	Pancrea
13	chr4:85536600-85552000	Weak transcription	NHEK	skin
14	chr4:85536800-85544800	Weak transcription	Esophagus	oesophagus
15	chr4:85536800-85546400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:85536800-85556600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:85536800-85570200	Weak transcription	Fetal Stomach	stomach
18	chr4:85537200-85568600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:85538600-85568600	Weak transcription	Brain Anterior Caudate	brain
20	chr4:85539000-85550600	Weak transcription	HMEC	breast
21	chr4:85539200-85560200	Weak transcription	Left Ventricle	heart
22	chr4:85540000-85546000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:85540000-85562000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr4:85540200-85544200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr4:85540200-85544200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:85540200-85547400	Strong transcription	Fetal Intestine Small	intestine
27	chr4:85540400-85556000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:85540600-85544000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:85540800-85558000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr4:85541000-85544000	Weak transcription	Fetal Intestine Large	intestine
31	chr4:85541000-85557800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:85541000-85561800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr4:85542400-85544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:85543000-85549600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:85543800-85544800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links