Variant report

Variant	rs11725803
Chromosome Location	chr4:85498763-85498764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85493510..85497718-chr4:85498470..85501665,5	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10516725	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726744	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737002	1.00[AMR][1000 genomes]
rs11939816	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944727	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944769	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443075	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367317	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367775	1.00[AMR][1000 genomes]
rs17375734	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375853	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376048	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376090	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376293	1.00[AMR][1000 genomes]
rs36068434	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41524654	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73831542	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699828	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85489800-85503400	Weak transcription	Lung	lung
2	chr4:85490000-85500400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:85490600-85500200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:85490600-85500600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:85490600-85501200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:85490800-85500200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:85491000-85500000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:85493600-85500000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:85495400-85500000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:85495600-85500000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:85495600-85500400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:85495600-85503400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr4:85495600-85503400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:85495800-85500000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:85495800-85500000	Weak transcription	HMEC	breast
16	chr4:85495800-85500200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:85495800-85500200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:85495800-85500200	Weak transcription	NHEK	skin
19	chr4:85495800-85502200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:85495800-85503400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr4:85496000-85500200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links