Variant report

Variant	rs10516725
Chromosome Location	chr4:85539489-85539490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85523808..85526163-chr4:85537761..85540086,2	MCF-7	breast:
2	chr4:85535638..85537405-chr4:85537938..85540350,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11721913	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725803	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733881	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11737002	1.00[AMR][1000 genomes]
rs11939816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944727	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17368157	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17375734	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376048	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376293	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17376461	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17376946	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17377352	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs35023321	0.84[EUR][1000 genomes]
rs36068434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41524654	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73831542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699828	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830333	chr4:85520643-85545644	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85515400-85544400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:85518600-85574800	Weak transcription	Stomach Mucosa	stomach
3	chr4:85520400-85559400	Weak transcription	Fetal Heart	heart
4	chr4:85525000-85564200	Weak transcription	Placenta	Placenta
5	chr4:85526800-85583000	Weak transcription	Gastric	stomach
6	chr4:85528200-85548200	Weak transcription	Colonic Mucosa	Colon
7	chr4:85528400-85564000	Weak transcription	Fetal Kidney	kidney
8	chr4:85529400-85581600	Weak transcription	Ovary	ovary
9	chr4:85529600-85587600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:85532200-85544200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:85532400-85540400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:85532400-85556800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:85532400-85571200	Weak transcription	Pancreas	Pancrea
14	chr4:85532600-85540600	Weak transcription	Fetal Intestine Large	intestine
15	chr4:85533200-85541400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:85536400-85541800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:85536600-85539600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:85536600-85552000	Weak transcription	NHEK	skin
19	chr4:85536800-85539800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:85536800-85540200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:85536800-85540200	Weak transcription	Fetal Intestine Small	intestine
22	chr4:85536800-85540800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:85536800-85544800	Weak transcription	Esophagus	oesophagus
24	chr4:85536800-85546400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr4:85536800-85556600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:85536800-85570200	Weak transcription	Fetal Stomach	stomach
27	chr4:85537200-85568600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:85537600-85542400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:85538000-85540600	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr4:85538000-85541000	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr4:85538400-85540000	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr4:85538600-85568600	Weak transcription	Brain Anterior Caudate	brain
33	chr4:85538800-85539600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr4:85539000-85550600	Weak transcription	HMEC	breast
35	chr4:85539200-85541200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr4:85539200-85560200	Weak transcription	Left Ventricle	heart
37	chr4:85539400-85540400	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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