Variant report

Variant	rs17367775
Chromosome Location	chr4:85569930-85569931
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85564288..85566182-chr4:85568579..85571461,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10516725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11721913	1.00[AMR][1000 genomes]
rs11725803	1.00[AMR][1000 genomes]
rs11726731	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11731505	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11733678	1.00[ASN][1000 genomes]
rs11733881	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737002	1.00[AMR][1000 genomes]
rs11939816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs11944727	0.85[EUR][1000 genomes]
rs11944769	0.85[EUR][1000 genomes]
rs1443075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17367317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17368157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368458	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368902	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17376048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17376090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17376293	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376489	0.91[EUR][1000 genomes]
rs17376946	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377338	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377352	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377666	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34548715	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35767732	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36068434	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41524654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs4569746	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73831542	0.85[EUR][1000 genomes]
rs7699828	0.82[EUR][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85518600-85574800	Weak transcription	Stomach Mucosa	stomach
2	chr4:85526800-85583000	Weak transcription	Gastric	stomach
3	chr4:85529400-85581600	Weak transcription	Ovary	ovary
4	chr4:85529600-85587600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:85532400-85571200	Weak transcription	Pancreas	Pancrea
6	chr4:85536800-85570200	Weak transcription	Fetal Stomach	stomach
7	chr4:85544600-85572400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:85545200-85576400	Weak transcription	Esophagus	oesophagus
9	chr4:85546600-85570400	Weak transcription	Small Intestine	intestine
10	chr4:85556600-85570400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:85556600-85572200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:85556800-85570600	Weak transcription	Lung	lung
13	chr4:85556800-85570600	Weak transcription	NHEK	skin
14	chr4:85560600-85570600	Weak transcription	Left Ventricle	heart
15	chr4:85561400-85570200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr4:85563400-85570600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:85563600-85570600	Weak transcription	Fetal Intestine Small	intestine
18	chr4:85564800-85587800	Weak transcription	Fetal Kidney	kidney
19	chr4:85565000-85570600	Weak transcription	Placenta	Placenta
20	chr4:85565400-85570600	Weak transcription	Aorta	Aorta
21	chr4:85566400-85570400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr4:85567200-85570400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:85567800-85571000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:85567800-85571200	Enhancers	Fetal Heart	heart
25	chr4:85568000-85570000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr4:85568000-85570200	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr4:85568000-85570400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr4:85568200-85570800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:85568400-85570200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:85568400-85573200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:85568600-85570000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr4:85568600-85571000	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr4:85568600-85572200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr4:85568600-85572400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:85568600-85573200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:85568600-85574000	Strong transcription	Duodenum Mucosa	Duodenum
37	chr4:85568800-85570400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr4:85568800-85571000	Enhancers	Fetal Lung	lung
39	chr4:85568800-85578600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr4:85568800-85589600	Weak transcription	Brain Angular Gyrus	brain
41	chr4:85569000-85570800	Enhancers	Colon Smooth Muscle	Colon
42	chr4:85569200-85570800	Weak transcription	Brain Hippocampus Middle	brain
43	chr4:85569200-85571600	Strong transcription	HMEC	breast
44	chr4:85569200-85572800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr4:85569200-85587200	Weak transcription	Brain Anterior Caudate	brain
46	chr4:85569400-85570400	Weak transcription	Liver	Liver
47	chr4:85569400-85571000	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr4:85569600-85570000	Weak transcription	HepG2	liver
49	chr4:85569600-85570600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:85569600-85570600	Weak transcription	Fetal Intestine Large	intestine

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