Variant report

Variant	rs17375853
Chromosome Location	chr4:85517242-85517243
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:85516667..85518357-chr4:85520389..85522832,2	K562	blood:
2	chr4:85503832..85505734-chr4:85515107..85517969,2	K562	blood:
3	chr4:85510318..85512988-chr4:85516693..85519474,2	MCF-7	breast:
4	chr4:85503009..85505849-chr4:85516310..85519703,4	MCF-7	breast:
5	chr4:85502546..85505934-chr4:85516505..85519420,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163624	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10516725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721913	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725803	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731505	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737002	1.00[AMR][1000 genomes]
rs11939816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944727	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944769	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367317	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17368157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap]
rs17375734	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376293	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17376461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap]
rs17376946	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap]
rs35023321	0.81[EUR][1000 genomes]
rs36068434	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41524654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73831542	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85507800-85518000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:85508800-85531000	Weak transcription	Pancreas	Pancrea
3	chr4:85511600-85518400	Enhancers	Fetal Heart	heart
4	chr4:85512000-85531000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:85514200-85517800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:85514800-85517600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:85514800-85519000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:85514800-85520000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:85515400-85517600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:85515400-85518000	Weak transcription	Stomach Mucosa	stomach
11	chr4:85515400-85544400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:85515600-85517600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:85515800-85530600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:85516000-85520400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:85516400-85517400	Weak transcription	HMEC	breast
16	chr4:85516600-85517800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:85516600-85519800	Weak transcription	Fetal Intestine Large	intestine
18	chr4:85516600-85520000	Weak transcription	Fetal Intestine Small	intestine
19	chr4:85517000-85519600	Enhancers	NHEK	skin
20	chr4:85517200-85517800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr4:85517200-85518000	Enhancers	H1 Cell Line	embryonic stem cell
22	chr4:85517200-85518200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr4:85517200-85519000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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