Variant report
| Variant | rs11781358 |
|---|---|
| Chromosome Location | chr8:66469926-66469927 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:66464553..66467314-chr8:66468868..66470767,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10106749 | 1.00[CHD][hapmap] |
| rs11776874 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11776926 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11779601 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11779602 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11782837 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11783633 | 0.84[EUR][1000 genomes] |
| rs11783755 | 0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13261559 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs13262793 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs13274205 | 1.00[CHD][hapmap] |
| rs13275168 | 1.00[CHD][hapmap] |
| rs13280521 | 1.00[CHD][hapmap] |
| rs13281090 | 1.00[CHD][hapmap] |
| rs7007987 | 1.00[CHD][hapmap] |
| rs7829434 | 1.00[CHD][hapmap] |
| rs869151 | 1.00[CHD][hapmap] |
| rs9650151 | 1.00[CHD][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761434 | chr8:65578467-66567678 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11781358 | ARFGEF1 | cis | cerebellum | SCAN |
| rs11781358 | ARMC1 | cis | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:66468600-66472400 | Weak transcription | Fetal Brain Female | brain |
