Variant report

Variant	rs11829166
Chromosome Location	chr12:121842587-121842588
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:121842463-121843346	GM12878	blood:	n/a	n/a
2	POLR2A	chr12:121842587-121842787	MCF10A-Er-Src	breast:	n/a	n/a
3	NFIC	chr12:121842505-121842961	HepG2	liver:	n/a	n/a
4	NFIC	chr12:121842398-121843166	ECC-1	luminal epithelium:	n/a	n/a
5	POLR2A	chr12:121842560-121842904	SK-N-SH	brain:	n/a	n/a
6	NFIC	chr12:121842417-121843132	ECC-1	luminal epithelium:	n/a	n/a
7	EP300	chr12:121842555-121842944	SK-N-SH_RA	brain:	n/a	n/a
8	POLR2A	chr12:121842543-121843469	GM12878	blood:	n/a	n/a
9	POLR2A	chr12:121842587-121842895	SK-N-MC	brain:	n/a	n/a
10	EP300	chr12:121842582-121842896	SK-N-SH_RA	brain:	n/a	n/a
11	NFIC	chr12:121842543-121842912	SK-N-SH	brain:	n/a	n/a
12	NFIC	chr12:121842383-121843229	SK-N-SH	brain:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121840334..121842977-chr12:121859647..121861794,2	MCF-7	breast:
2	chr12:121841412..121843273-chr12:121861123..121863390,2	K562	blood:
3	chr12:121842475..121844686-chr12:121864287..121866762,2	MCF-7	breast:
4	chr12:121790056..121793007-chr12:121841274..121843230,2	MCF-7	breast:

No data

Variant related genes	Relation type
ANAPC5	TF binding region
RNF34	TF binding region
ENSG00000089053	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11065564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1138515	0.97[EUR][1000 genomes]
rs11830307	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11831204	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831315	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11832889	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11832924	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11833355	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11837988	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099579	0.98[EUR][1000 genomes]
rs12300459	0.85[EUR][1000 genomes]
rs13754	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs15876	0.98[EUR][1000 genomes]
rs2293462	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293463	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28557279	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28682461	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3751134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3751135	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3763973	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55871623	0.93[EUR][1000 genomes]
rs55997636	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55999842	0.95[EUR][1000 genomes]
rs56040349	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56174403	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196633	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57206363	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57636873	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57703781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57917604	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57944841	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58290222	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58583717	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59199848	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59558352	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59645029	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59697780	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59966462	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60270456	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60582822	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60801024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61697335	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295059	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7295066	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295365	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295405	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7311543	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7954896	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7960758	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7960820	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7961001	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7967850	0.95[EUR][1000 genomes]
rs8462	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11829166	FBXL10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121838800-121843000	Weak transcription	Lung	lung
2	chr12:121838800-121852600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:121839000-121842600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:121839000-121842800	Weak transcription	Left Ventricle	heart
5	chr12:121839000-121842800	Weak transcription	Spleen	Spleen
6	chr12:121839000-121852600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:121839000-121853800	Weak transcription	Ovary	ovary
8	chr12:121839000-121854800	Weak transcription	Gastric	stomach
9	chr12:121839000-121855200	Weak transcription	Fetal Brain Male	brain
10	chr12:121839000-121855400	Weak transcription	Aorta	Aorta
11	chr12:121839000-121855400	Weak transcription	Esophagus	oesophagus
12	chr12:121839000-121855400	Weak transcription	Pancreas	Pancrea
13	chr12:121839000-121855400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr12:121839000-121861000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:121839000-121866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr12:121839000-121866400	Weak transcription	Small Intestine	intestine
17	chr12:121839200-121842600	Weak transcription	Adipose Nuclei	Adipose
18	chr12:121839200-121842600	Weak transcription	HSMM	muscle
19	chr12:121839200-121842800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr12:121839200-121842800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr12:121839200-121854800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr12:121839200-121855000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr12:121839200-121855400	Weak transcription	Right Ventricle	heart
24	chr12:121839200-121855600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr12:121839200-121856800	Weak transcription	HSMMtube	muscle
26	chr12:121839200-121860800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr12:121839400-121842800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr12:121839400-121842800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr12:121839400-121844800	Weak transcription	Colonic Mucosa	Colon
30	chr12:121839600-121842600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr12:121839600-121842800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr12:121839600-121854800	Weak transcription	Stomach Mucosa	stomach
33	chr12:121839800-121842600	Weak transcription	Brain Anterior Caudate	brain
34	chr12:121839800-121842800	Weak transcription	Fetal Kidney	kidney
35	chr12:121839800-121844400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr12:121839800-121855200	Weak transcription	Brain Angular Gyrus	brain
37	chr12:121840000-121842800	Weak transcription	Primary B cells from cord blood	blood
38	chr12:121840000-121842800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr12:121840000-121843000	Weak transcription	Fetal Brain Female	brain
40	chr12:121840000-121844200	Weak transcription	Brain Substantia Nigra	brain
41	chr12:121840000-121855200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr12:121840200-121844000	Weak transcription	Liver	Liver
43	chr12:121840400-121842600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr12:121840400-121842600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr12:121840400-121842600	Weak transcription	Fetal Heart	heart
46	chr12:121840400-121842600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr12:121840400-121842600	Weak transcription	NHEK	skin
48	chr12:121840400-121842600	Weak transcription	NHLF	lung
49	chr12:121840400-121846600	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr12:121840400-121847800	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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