Variant report

Variant	rs55999842
Chromosome Location	chr12:121865243-121865244
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121861656..121865460-chr12:121901915..121906805,6	K562	blood:
2	chr12:121842475..121844686-chr12:121864287..121866762,2	MCF-7	breast:
3	chr12:121864715..121866455-chr12:121868040..121869622,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11065564	0.95[EUR][1000 genomes]
rs1138515	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11829166	0.95[EUR][1000 genomes]
rs11830307	0.82[EUR][1000 genomes]
rs11831204	0.81[EUR][1000 genomes]
rs11831315	0.95[EUR][1000 genomes]
rs11832889	0.95[EUR][1000 genomes]
rs11832924	0.95[EUR][1000 genomes]
rs11833355	0.93[EUR][1000 genomes]
rs11837988	0.95[EUR][1000 genomes]
rs12099579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300459	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13754	0.95[EUR][1000 genomes]
rs15876	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2293462	0.95[EUR][1000 genomes]
rs2293463	0.95[EUR][1000 genomes]
rs28557279	0.98[EUR][1000 genomes]
rs28682461	0.98[EUR][1000 genomes]
rs3751134	0.95[EUR][1000 genomes]
rs3751135	0.95[EUR][1000 genomes]
rs3763973	0.95[EUR][1000 genomes]
rs4640009	0.95[EUR][1000 genomes]
rs55871623	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55997636	0.95[EUR][1000 genomes]
rs56040349	0.95[EUR][1000 genomes]
rs56174403	0.93[EUR][1000 genomes]
rs56196633	0.95[EUR][1000 genomes]
rs56294627	0.98[EUR][1000 genomes]
rs57206363	0.95[EUR][1000 genomes]
rs57636873	0.95[EUR][1000 genomes]
rs57703781	0.95[EUR][1000 genomes]
rs57917604	0.97[EUR][1000 genomes]
rs57944841	0.98[EUR][1000 genomes]
rs58290222	0.95[EUR][1000 genomes]
rs58583717	0.95[EUR][1000 genomes]
rs59199848	0.95[EUR][1000 genomes]
rs59558352	0.95[EUR][1000 genomes]
rs59645029	0.95[EUR][1000 genomes]
rs59697780	0.95[EUR][1000 genomes]
rs59966462	0.95[EUR][1000 genomes]
rs60270456	0.95[EUR][1000 genomes]
rs60582822	0.95[EUR][1000 genomes]
rs60801024	0.95[EUR][1000 genomes]
rs61697335	0.95[EUR][1000 genomes]
rs7295059	0.95[EUR][1000 genomes]
rs7295066	0.93[EUR][1000 genomes]
rs7295365	0.95[EUR][1000 genomes]
rs7295405	0.95[EUR][1000 genomes]
rs7311543	0.95[EUR][1000 genomes]
rs7954896	0.93[EUR][1000 genomes]
rs7960758	0.92[EUR][1000 genomes]
rs7960820	0.95[EUR][1000 genomes]
rs7961001	0.93[EUR][1000 genomes]
rs7967850	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8462	0.98[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs55999842	FBXL10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121839000-121866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:121839000-121866400	Weak transcription	Small Intestine	intestine
3	chr12:121841400-121874600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:121850000-121871800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:121850400-121887400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:121850800-121874600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr12:121851000-121870800	Strong transcription	Fetal Thymus	thymus
8	chr12:121851600-121872200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr12:121851600-121874400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:121851800-121869000	Strong transcription	Hela-S3	cervix
11	chr12:121851800-121874600	Strong transcription	Dnd41	blood
12	chr12:121851800-121891400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr12:121852000-121874400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:121852200-121871600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr12:121852200-121872200	Strong transcription	Liver	Liver
16	chr12:121852200-121873400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr12:121852200-121874400	Strong transcription	Fetal Stomach	stomach
18	chr12:121852200-121883200	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr12:121852200-121884800	Strong transcription	Primary T cells from cord blood	blood
20	chr12:121852400-121872000	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr12:121852400-121874400	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr12:121852400-121881800	Strong transcription	Duodenum Mucosa	Duodenum
23	chr12:121852600-121872200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr12:121852600-121881600	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr12:121852800-121872000	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr12:121852800-121874200	Strong transcription	Thymus	Thymus
27	chr12:121853000-121874400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr12:121853000-121884800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr12:121853400-121869600	Strong transcription	Osteobl	bone
30	chr12:121853600-121872000	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr12:121853800-121869600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr12:121853800-121870800	Strong transcription	NH-A	brain
33	chr12:121853800-121871400	Strong transcription	Placenta	Placenta
34	chr12:121853800-121874000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr12:121853800-121880800	Strong transcription	Ovary	ovary
36	chr12:121853800-121880800	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr12:121853800-121881000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr12:121853800-121881000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr12:121854000-121868800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
40	chr12:121854000-121872000	Strong transcription	Fetal Lung	lung
41	chr12:121854000-121872200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr12:121854000-121874200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr12:121854000-121874600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr12:121854000-121880600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr12:121854000-121881400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr12:121854200-121872200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr12:121854200-121881000	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr12:121854400-121873400	Strong transcription	A549	lung
49	chr12:121854600-121870800	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr12:121854800-121869800	Strong transcription	HMEC	breast

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