Variant report

Variant	rs56174403
Chromosome Location	chr12:121841403-121841404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:121841372-121841422	Jurkat	blood:	n/a
2	chr12:121841372-121841422	GM12891	blood:	n/a
3	chr12:121841372-121841422	U87	brain:	n/a
4	chr12:121841372-121841422	HCPEpiC	choroid plexus:	n/a
5	chr12:121841372-121841422	AG10803	skin:	n/a
6	chr12:121841372-121841422	Caco-2	colon:	n/a
7	chr12:121841372-121841422	HMEC	breast:	n/a
8	chr12:121841372-121841422	NHDF-neo	bronchial:	n/a
9	chr12:121841372-121841422	HPAEpiC	pulmonary alveolar:	n/a
10	chr12:121841372-121841422	ProgFib	skin:	n/a
11	chr12:121841372-121841422	IMR90	lung:	fetal
12	chr12:121841372-121841422	AG09309	skin:	n/a
13	chr12:121841372-121841422	GM19239	blood:	n/a
14	chr12:121841372-121841422	GM12892	blood:	n/a
15	chr12:121841372-121841422	T-47D	breast:	n/a
16	chr12:121841372-121841422	H1-hESC	embryonic stem cell:	embryo
17	chr12:121841372-121841422	AoSMC	blood vessel:	n/a
18	chr12:121841372-121841422	BE2_C	brain:	n/a
19	chr12:121841372-121841422	HEEpiC	esophagus:	n/a
20	chr12:121841372-121841422	Hepatocyte	liver:	n/a
21	chr12:121841372-121841422	HCF	heart:	n/a
22	chr12:121841372-121841422	HRPEpiC	eye:	n/a
23	chr12:121841372-121841422	BJ	skin:	n/a
24	chr12:121841372-121841422	HUVEC	blood vessel:	n/a
25	chr12:121841372-121841422	PrEC	prostate:	n/a
26	chr12:121841372-121841422	AG09319	gingival:	n/a
27	chr12:121841372-121841422	SK-N-SH_RA	brain:	n/a
28	chr12:121841372-121841422	HIPEpiC	eye:	n/a
29	chr12:121841372-121841422	HL-60	blood:	n/a
30	chr12:121841372-121841422	LNCaP	prostate:	n/a
31	chr12:121841372-121841422	NHBE	bronchial:	n/a
32	chr12:121841372-121841422	PANC-1	pancreas:	n/a
33	chr12:121841372-121841422	ovcar-3	ovarian:	n/a
34	chr12:121841372-121841422	HEK293	kidney:	embryo
35	chr12:121841372-121841422	PFSK-1	brain:	n/a
36	chr12:121841372-121841422	AG04450	lung:	fetal
37	chr12:121841372-121841422	Hela-S3	cervix:	n/a
38	chr12:121841372-121841422	GM12878	blood:	n/a
39	chr12:121841372-121841422	HNPCEpiC	eye:	n/a
40	chr12:121841372-121841422	HepG2	liver:	n/a
41	chr12:121841372-121841422	SK-N-MC	brain:	n/a
42	chr12:121841372-121841422	HRE	kidney:	n/a
43	chr12:121841372-121841422	SKMC	muscle:	n/a
44	chr12:121841372-121841422	GM06990	blood:	n/a
45	chr12:121841372-121841422	NT2-D1	testis:	n/a
46	chr12:121841372-121841422	AG04449	skin:	fetal
47	chr12:121841372-121841422	MCF10A-Er-Src	breast:	n/a
48	chr12:121841372-121841422	HRCEpiC	kidney:	n/a
49	chr12:121841372-121841422	ECC-1	luminal epithelium:	n/a
50	chr12:121841372-121841422	SAEC	small airway:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121840334..121842977-chr12:121859647..121861794,2	MCF-7	breast:
2	chr12:121784938..121792349-chr12:121835915..121842265,20	K562	blood:
3	chr12:121837983..121842032-chr12:121901843..121907067,6	MCF-7	breast:
4	chr12:121835704..121841982-chr12:121855433..121861253,10	K562	blood:
5	chr12:121790056..121793007-chr12:121841274..121843230,2	MCF-7	breast:

No data

Variant related genes	Relation type
ANAPC5	CpG island
ENSG00000089053	Chromatin interaction
ENSG00000170633	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11065564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1138515	0.95[EUR][1000 genomes]
rs11829166	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11830307	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11831204	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831315	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11832889	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11832924	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11833355	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11837988	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099579	0.97[EUR][1000 genomes]
rs12300459	0.84[EUR][1000 genomes]
rs13754	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs15876	0.97[EUR][1000 genomes]
rs2293462	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293463	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28557279	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28682461	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3751134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3751135	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3763973	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55871623	0.92[EUR][1000 genomes]
rs55997636	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55999842	0.93[EUR][1000 genomes]
rs56040349	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56196633	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57206363	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57636873	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57703781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57917604	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57944841	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58290222	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58583717	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59199848	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59558352	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59645029	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59697780	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59966462	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60270456	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60582822	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60801024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61697335	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295059	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7295066	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295365	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295405	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7311543	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7954896	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7960758	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7960820	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7961001	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7967850	0.93[EUR][1000 genomes]
rs8462	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56174403	FBXL10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121838800-121843000	Weak transcription	Lung	lung
2	chr12:121838800-121852600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:121839000-121841800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr12:121839000-121842000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:121839000-121842000	Weak transcription	Fetal Muscle Leg	muscle
6	chr12:121839000-121842200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr12:121839000-121842400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr12:121839000-121842400	Weak transcription	Placenta	Placenta
9	chr12:121839000-121842600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr12:121839000-121842800	Weak transcription	Left Ventricle	heart
11	chr12:121839000-121842800	Weak transcription	Spleen	Spleen
12	chr12:121839000-121852600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:121839000-121853800	Weak transcription	Ovary	ovary
14	chr12:121839000-121854800	Weak transcription	Gastric	stomach
15	chr12:121839000-121855200	Weak transcription	Fetal Brain Male	brain
16	chr12:121839000-121855400	Weak transcription	Aorta	Aorta
17	chr12:121839000-121855400	Weak transcription	Esophagus	oesophagus
18	chr12:121839000-121855400	Weak transcription	Pancreas	Pancrea
19	chr12:121839000-121855400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr12:121839000-121861000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:121839000-121866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr12:121839000-121866400	Weak transcription	Small Intestine	intestine
23	chr12:121839200-121842000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr12:121839200-121842000	Weak transcription	Fetal Stomach	stomach
25	chr12:121839200-121842000	Weak transcription	Psoas Muscle	Psoas
26	chr12:121839200-121842000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr12:121839200-121842600	Weak transcription	Adipose Nuclei	Adipose
28	chr12:121839200-121842600	Weak transcription	HSMM	muscle
29	chr12:121839200-121842800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr12:121839200-121842800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr12:121839200-121854800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr12:121839200-121855000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr12:121839200-121855400	Weak transcription	Right Ventricle	heart
34	chr12:121839200-121855600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr12:121839200-121856800	Weak transcription	HSMMtube	muscle
36	chr12:121839200-121860800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr12:121839400-121842000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr12:121839400-121842800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr12:121839400-121842800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr12:121839400-121844800	Weak transcription	Colonic Mucosa	Colon
41	chr12:121839600-121842000	Weak transcription	Fetal Lung	lung
42	chr12:121839600-121842200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr12:121839600-121842400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr12:121839600-121842400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr12:121839600-121842600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr12:121839600-121842800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr12:121839600-121854800	Weak transcription	Stomach Mucosa	stomach
48	chr12:121839800-121841800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr12:121839800-121841800	Weak transcription	Fetal Intestine Small	intestine
50	chr12:121839800-121842000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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