Variant report

Variant	rs11831204
Chromosome Location	chr12:121846009-121846010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121843243..121846458-chr12:121865314..121867190,3	K562	blood:
2	chr12:121844680..121846298-chr12:121855544..121858323,2	K562	blood:
3	chr12:121844412..121847099-chr12:121852966..121855039,2	MCF-7	breast:
4	chr12:121844060..121846748-chr12:121851196..121853703,2	K562	blood:

Variant related genes	Relation type
ENSG00000170633	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11065564	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1138515	0.83[EUR][1000 genomes]
rs11829166	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11830307	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11831315	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11832889	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11832924	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11833355	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11837988	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099579	0.85[EUR][1000 genomes]
rs13754	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs15876	0.85[EUR][1000 genomes]
rs2293462	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293463	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28557279	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28682461	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3751134	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3751135	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3763973	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640009	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55671311	0.83[EUR][1000 genomes]
rs55997636	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55999842	0.81[EUR][1000 genomes]
rs56040349	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56174403	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196633	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294627	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57206363	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57636873	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57703781	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57917604	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57944841	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58290222	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58583717	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59199848	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59558352	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59645029	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59697780	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59966462	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60270456	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60582822	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60801024	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61697335	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295059	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7295066	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295365	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295405	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7311543	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7954896	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7960758	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7960820	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7961001	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7967850	0.81[EUR][1000 genomes]
rs8462	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121838800-121852600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:121839000-121852600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:121839000-121853800	Weak transcription	Ovary	ovary
4	chr12:121839000-121854800	Weak transcription	Gastric	stomach
5	chr12:121839000-121855200	Weak transcription	Fetal Brain Male	brain
6	chr12:121839000-121855400	Weak transcription	Aorta	Aorta
7	chr12:121839000-121855400	Weak transcription	Esophagus	oesophagus
8	chr12:121839000-121855400	Weak transcription	Pancreas	Pancrea
9	chr12:121839000-121855400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr12:121839000-121861000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:121839000-121866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr12:121839000-121866400	Weak transcription	Small Intestine	intestine
13	chr12:121839200-121854800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr12:121839200-121855000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:121839200-121855400	Weak transcription	Right Ventricle	heart
16	chr12:121839200-121855600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr12:121839200-121856800	Weak transcription	HSMMtube	muscle
18	chr12:121839200-121860800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:121839600-121854800	Weak transcription	Stomach Mucosa	stomach
20	chr12:121839800-121855200	Weak transcription	Brain Angular Gyrus	brain
21	chr12:121840000-121855200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr12:121840400-121846600	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr12:121840400-121847800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr12:121840400-121852000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr12:121840600-121847600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:121840600-121847800	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr12:121840600-121848800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr12:121840600-121855000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr12:121840800-121847000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr12:121840800-121847400	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr12:121840800-121852600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr12:121841200-121847600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr12:121841200-121848000	Strong transcription	Fetal Thymus	thymus
34	chr12:121841400-121846400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr12:121841400-121847800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr12:121841400-121874600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr12:121841800-121847200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr12:121841800-121847600	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr12:121841800-121847600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr12:121841800-121847600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr12:121841800-121847600	Strong transcription	Dnd41	blood
42	chr12:121842000-121847600	Strong transcription	Primary B cells from peripheral blood	blood
43	chr12:121842000-121847600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr12:121842000-121847600	Strong transcription	Thymus	Thymus
45	chr12:121842000-121847800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr12:121842200-121846600	Strong transcription	A549	lung
47	chr12:121842200-121847800	Strong transcription	Primary hematopoietic stem cells	blood
48	chr12:121842200-121847800	Strong transcription	Duodenum Mucosa	Duodenum
49	chr12:121842400-121847400	Strong transcription	Placenta	Placenta
50	chr12:121842400-121847600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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