Variant report

Variant	rs59199848
Chromosome Location	chr12:121841148-121841149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121840334..121842977-chr12:121859647..121861794,2	MCF-7	breast:
2	chr12:121784938..121792349-chr12:121835915..121842265,20	K562	blood:
3	chr12:121837983..121842032-chr12:121901843..121907067,6	MCF-7	breast:
4	chr12:121839611..121841221-chr12:121877711..121879603,2	MCF-7	breast:
5	chr12:121786049..121792349-chr12:121835999..121841368,18	K562	blood:
6	chr12:121835704..121841982-chr12:121855433..121861253,10	K562	blood:

Variant related genes	Relation type
ENSG00000170633	Chromatin interaction
ENSG00000089053	Chromatin interaction
ENSG00000089094	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11065564	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1138515	0.97[EUR][1000 genomes]
rs11829166	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11830307	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11831204	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831315	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11832889	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11832924	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11833355	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11837988	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099579	0.98[EUR][1000 genomes]
rs12300459	0.85[EUR][1000 genomes]
rs13754	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs15876	0.98[EUR][1000 genomes]
rs2293462	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293463	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28557279	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28682461	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3751134	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3751135	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3763973	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640009	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55871623	0.93[EUR][1000 genomes]
rs55997636	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55999842	0.95[EUR][1000 genomes]
rs56040349	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56174403	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196633	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294627	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57206363	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57636873	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57703781	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57917604	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57944841	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58290222	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58583717	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59558352	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59645029	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59697780	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59966462	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60270456	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60582822	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60801024	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61697335	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295059	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7295066	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295365	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295405	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7311543	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7954896	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7960758	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7960820	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7961001	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7967850	0.95[EUR][1000 genomes]
rs8462	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59199848	FBXL10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121838800-121843000	Weak transcription	Lung	lung
2	chr12:121838800-121852600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:121839000-121841800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr12:121839000-121842000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:121839000-121842000	Weak transcription	Fetal Muscle Leg	muscle
6	chr12:121839000-121842200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr12:121839000-121842400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr12:121839000-121842400	Weak transcription	Placenta	Placenta
9	chr12:121839000-121842600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr12:121839000-121842800	Weak transcription	Left Ventricle	heart
11	chr12:121839000-121842800	Weak transcription	Spleen	Spleen
12	chr12:121839000-121852600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:121839000-121853800	Weak transcription	Ovary	ovary
14	chr12:121839000-121854800	Weak transcription	Gastric	stomach
15	chr12:121839000-121855200	Weak transcription	Fetal Brain Male	brain
16	chr12:121839000-121855400	Weak transcription	Aorta	Aorta
17	chr12:121839000-121855400	Weak transcription	Esophagus	oesophagus
18	chr12:121839000-121855400	Weak transcription	Pancreas	Pancrea
19	chr12:121839000-121855400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr12:121839000-121861000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:121839000-121866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr12:121839000-121866400	Weak transcription	Small Intestine	intestine
23	chr12:121839200-121841400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr12:121839200-121841400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr12:121839200-121841400	Weak transcription	NH-A	brain
26	chr12:121839200-121842000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr12:121839200-121842000	Weak transcription	Fetal Stomach	stomach
28	chr12:121839200-121842000	Weak transcription	Psoas Muscle	Psoas
29	chr12:121839200-121842000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr12:121839200-121842600	Weak transcription	Adipose Nuclei	Adipose
31	chr12:121839200-121842600	Weak transcription	HSMM	muscle
32	chr12:121839200-121842800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr12:121839200-121842800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr12:121839200-121854800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr12:121839200-121855000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr12:121839200-121855400	Weak transcription	Right Ventricle	heart
37	chr12:121839200-121855600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr12:121839200-121856800	Weak transcription	HSMMtube	muscle
39	chr12:121839200-121860800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr12:121839400-121841200	Weak transcription	Fetal Thymus	thymus
41	chr12:121839400-121842000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr12:121839400-121842800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr12:121839400-121842800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr12:121839400-121844800	Weak transcription	Colonic Mucosa	Colon
45	chr12:121839600-121842000	Weak transcription	Fetal Lung	lung
46	chr12:121839600-121842200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr12:121839600-121842400	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr12:121839600-121842400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr12:121839600-121842600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr12:121839600-121842800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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