Variant report

Variant	rs60270456
Chromosome Location	chr12:121847617-121847618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121771295..121773363-chr12:121846165..121848877,2	K562	blood:

Variant related genes	Relation type
ENSG00000089053	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11065564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1138515	0.97[EUR][1000 genomes]
rs11829166	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11830307	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11831204	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831315	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11832889	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11832924	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11833355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11837988	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099579	0.98[EUR][1000 genomes]
rs12300459	0.85[EUR][1000 genomes]
rs13754	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs15876	0.98[EUR][1000 genomes]
rs2293462	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293463	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28557279	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28682461	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3751134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3751135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3763973	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640009	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55871623	0.93[EUR][1000 genomes]
rs55997636	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55999842	0.95[EUR][1000 genomes]
rs56040349	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56174403	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196633	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294627	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57206363	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57636873	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57703781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57917604	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57944841	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58290222	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58583717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59199848	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59558352	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59645029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59697780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59966462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60582822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60801024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61697335	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295059	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7295066	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295365	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295405	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7311543	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7954896	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7960758	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7960820	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7961001	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7967850	0.95[EUR][1000 genomes]
rs8462	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs60270456	FBXL10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121838800-121852600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:121839000-121852600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:121839000-121853800	Weak transcription	Ovary	ovary
4	chr12:121839000-121854800	Weak transcription	Gastric	stomach
5	chr12:121839000-121855200	Weak transcription	Fetal Brain Male	brain
6	chr12:121839000-121855400	Weak transcription	Aorta	Aorta
7	chr12:121839000-121855400	Weak transcription	Esophagus	oesophagus
8	chr12:121839000-121855400	Weak transcription	Pancreas	Pancrea
9	chr12:121839000-121855400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr12:121839000-121861000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:121839000-121866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr12:121839000-121866400	Weak transcription	Small Intestine	intestine
13	chr12:121839200-121854800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr12:121839200-121855000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:121839200-121855400	Weak transcription	Right Ventricle	heart
16	chr12:121839200-121855600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr12:121839200-121856800	Weak transcription	HSMMtube	muscle
18	chr12:121839200-121860800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:121839600-121854800	Weak transcription	Stomach Mucosa	stomach
20	chr12:121839800-121855200	Weak transcription	Brain Angular Gyrus	brain
21	chr12:121840000-121855200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr12:121840400-121847800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr12:121840400-121852000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr12:121840600-121847800	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr12:121840600-121848800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr12:121840600-121855000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr12:121840800-121852600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr12:121841200-121848000	Strong transcription	Fetal Thymus	thymus
29	chr12:121841400-121847800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr12:121841400-121874600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr12:121842000-121847800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr12:121842200-121847800	Strong transcription	Primary hematopoietic stem cells	blood
33	chr12:121842200-121847800	Strong transcription	Duodenum Mucosa	Duodenum
34	chr12:121842800-121847800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr12:121843000-121847800	Strong transcription	Fetal Intestine Large	intestine
36	chr12:121843000-121854800	Weak transcription	HUVEC	blood vessel
37	chr12:121843200-121848000	Strong transcription	GM12878-XiMat	blood
38	chr12:121843200-121848400	Weak transcription	Fetal Heart	heart
39	chr12:121843200-121852400	Weak transcription	Colon Smooth Muscle	Colon
40	chr12:121843200-121853200	Weak transcription	HepG2	liver
41	chr12:121843200-121853800	Weak transcription	Brain Anterior Caudate	brain
42	chr12:121843200-121855600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr12:121843400-121848000	Strong transcription	Fetal Stomach	stomach
44	chr12:121843400-121855200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr12:121843400-121855400	Weak transcription	Spleen	Spleen
46	chr12:121843600-121853800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr12:121843600-121853800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr12:121843600-121854800	Weak transcription	NHLF	lung
49	chr12:121844200-121853800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr12:121844400-121847800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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