Variant report

Variant	rs57206363
Chromosome Location	chr12:121840239-121840240
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr12:121839985-121840346	HepG2	liver:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121826097..121827677-chr12:121838078..121840694,2	MCF-7	breast:
2	chr12:121788188..121792674-chr12:121835209..121840455,13	MCF-7	breast:
3	chr12:121784938..121792349-chr12:121835915..121842265,20	K562	blood:
4	chr12:121823951..121831575-chr12:121836455..121840985,9	K562	blood:
5	chr12:121788153..121793367-chr12:121835114..121840699,18	MCF-7	breast:
6	chr12:121837983..121842032-chr12:121901843..121907067,6	MCF-7	breast:
7	chr12:121734916..121736998-chr12:121837533..121840449,2	MCF-7	breast:
8	chr12:121839611..121841221-chr12:121877711..121879603,2	MCF-7	breast:
9	chr12:121838349..121841070-chr12:121851218..121853535,3	MCF-7	breast:
10	chr12:121786049..121792349-chr12:121835999..121841368,18	K562	blood:
11	chr12:121835704..121841982-chr12:121855433..121861253,10	K562	blood:

No data

Variant related genes	Relation type
ANAPC5	TF binding region
ENSG00000170633	Chromatin interaction
ENSG00000089094	Chromatin interaction
ENSG00000110931	Chromatin interaction
ENSG00000089053	Chromatin interaction
ENSG00000258435	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11065564	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1138515	0.97[EUR][1000 genomes]
rs11829166	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11830307	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11831204	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831315	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11832889	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11832924	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11833355	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11837988	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099579	0.98[EUR][1000 genomes]
rs12300459	0.85[EUR][1000 genomes]
rs13754	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs15876	0.98[EUR][1000 genomes]
rs2293462	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293463	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28557279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28682461	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3751134	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3751135	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3763973	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640009	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55871623	0.93[EUR][1000 genomes]
rs55997636	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55999842	0.95[EUR][1000 genomes]
rs56040349	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56174403	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196633	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294627	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57636873	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57703781	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57917604	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57944841	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58290222	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58583717	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59199848	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59558352	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59645029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59697780	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59966462	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60270456	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60582822	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60801024	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61697335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295059	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7295066	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295365	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7295405	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7311543	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7954896	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7960758	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7960820	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7961001	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7967850	0.95[EUR][1000 genomes]
rs8462	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs57206363	FBXL10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121836600-121840600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:121838800-121843000	Weak transcription	Lung	lung
3	chr12:121838800-121852600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:121839000-121840600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr12:121839000-121840600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr12:121839000-121841800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr12:121839000-121842000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:121839000-121842000	Weak transcription	Fetal Muscle Leg	muscle
9	chr12:121839000-121842200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:121839000-121842400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr12:121839000-121842400	Weak transcription	Placenta	Placenta
12	chr12:121839000-121842600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr12:121839000-121842800	Weak transcription	Left Ventricle	heart
14	chr12:121839000-121842800	Weak transcription	Spleen	Spleen
15	chr12:121839000-121852600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr12:121839000-121853800	Weak transcription	Ovary	ovary
17	chr12:121839000-121854800	Weak transcription	Gastric	stomach
18	chr12:121839000-121855200	Weak transcription	Fetal Brain Male	brain
19	chr12:121839000-121855400	Weak transcription	Aorta	Aorta
20	chr12:121839000-121855400	Weak transcription	Esophagus	oesophagus
21	chr12:121839000-121855400	Weak transcription	Pancreas	Pancrea
22	chr12:121839000-121855400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr12:121839000-121861000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr12:121839000-121866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr12:121839000-121866400	Weak transcription	Small Intestine	intestine
26	chr12:121839200-121840400	Enhancers	Fetal Heart	heart
27	chr12:121839200-121840400	Enhancers	NHEK	skin
28	chr12:121839200-121840400	Enhancers	Osteobl	bone
29	chr12:121839200-121840600	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr12:121839200-121840800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr12:121839200-121840800	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr12:121839200-121840800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr12:121839200-121840800	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr12:121839200-121840800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr12:121839200-121841000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr12:121839200-121841400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr12:121839200-121841400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr12:121839200-121841400	Weak transcription	NH-A	brain
39	chr12:121839200-121842000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr12:121839200-121842000	Weak transcription	Fetal Stomach	stomach
41	chr12:121839200-121842000	Weak transcription	Psoas Muscle	Psoas
42	chr12:121839200-121842000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr12:121839200-121842600	Weak transcription	Adipose Nuclei	Adipose
44	chr12:121839200-121842600	Weak transcription	HSMM	muscle
45	chr12:121839200-121842800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr12:121839200-121842800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr12:121839200-121854800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr12:121839200-121855000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr12:121839200-121855400	Weak transcription	Right Ventricle	heart
50	chr12:121839200-121855600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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