Variant report

Variant rs11856662
Chromosome Location chr15:52758219-52758220
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52753200-52758600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
2 chr15:52753400-52758400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr15:52753600-52762600 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
4 chr15:52754800-52759200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
5 chr15:52755000-52758600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr15:52755000-52758600 Enhancers HUVEC blood vessel
7 chr15:52755200-52759200 Enhancers Primary T helper cells fromperipheralblood blood
8 chr15:52755400-52758400 Weak transcription Primary neutrophils fromperipheralblood blood
9 chr15:52755400-52758400 Flanking Active TSS GM12878-XiMat blood
10 chr15:52755400-52759200 Enhancers Primary T helper cells PMA-I stimulated --
11 chr15:52755400-52759200 Enhancers Duodenum Mucosa Duodenum
12 chr15:52755600-52759400 Enhancers Primary B cells from cord blood blood
13 chr15:52755800-52759000 Enhancers Primary T helper naive cells from peripheral blood blood
14 chr15:52755800-52759200 Enhancers Primary T killer memory cells from peripheral blood blood
15 chr15:52755800-52759400 Enhancers Primary B cells from peripheral blood blood
16 chr15:52756200-52759200 Enhancers Primary Natural Killer cells fromperipheralblood blood
17 chr15:52756200-52759400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
18 chr15:52756400-52758600 Enhancers Rectal Mucosa Donor 29 rectum
19 chr15:52756400-52759200 Enhancers Brain Hippocampus Middle brain
20 chr15:52756800-52758400 Weak transcription Brain Anterior Caudate brain
21 chr15:52756800-52758600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
22 chr15:52756800-52759200 Enhancers Primary T cells fromperipheralblood blood
23 chr15:52756800-52759200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
24 chr15:52756800-52759200 Enhancers Primary T regulatory cells fromperipheralblood blood
25 chr15:52756800-52759400 Enhancers Primary T helper 17 cells PMA-I stimulated --
26 chr15:52757000-52758400 Weak transcription Psoas Muscle Psoas
27 chr15:52757200-52758400 Weak transcription Brain Angular Gyrus brain
28 chr15:52757200-52770400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr15:52757400-52758400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr15:52757400-52758400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr15:52757400-52758400 Weak transcription Thymus Thymus
32 chr15:52757400-52758600 Weak transcription Lung lung
33 chr15:52757400-52759400 Enhancers Primary monocytes fromperipheralblood blood
34 chr15:52757400-52759400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
35 chr15:52757400-52761200 Weak transcription NHLF lung
36 chr15:52757400-52771800 Weak transcription Primary T cells from cord blood blood
37 chr15:52757600-52758600 Weak transcription Aorta Aorta
38 chr15:52758000-52758400 Enhancers ES-I3 Cell Line embryonic stem cell
39 chr15:52758000-52758400 Flanking Active TSS ES-WA7 Cell Line embryonic stem cell
40 chr15:52758000-52758400 Enhancers HUES6 Cell Line embryonic stem cell
41 chr15:52758000-52758400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
42 chr15:52758000-52758800 Enhancers Fetal Thymus thymus
43 chr15:52758000-52759000 Enhancers Primary hematopoietic stem cells short term culture blood
44 chr15:52758000-52759200 Enhancers Primary T killer naive cells fromperipheralblood blood
45 chr15:52758000-52759200 Enhancers Brain Cingulate Gyrus brain
46 chr15:52758000-52759400 Enhancers HUES48 Cell Line embryonic stem cell
47 chr15:52758000-52759400 Enhancers HUES64 Cell Line embryonic stem cell
48 chr15:52758200-52758400 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
49 chr15:52758200-52758400 Enhancers Colonic Mucosa Colon
50 chr15:52758200-52758400 Enhancers HSMM muscle

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