Variant report

Variant	rs1693524
Chromosome Location	chr15:52829483-52829484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 194 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:189)

rs_ID	r²[population]
rs1001407	0.82[EUR][1000 genomes]
rs10518689	0.80[CEU][hapmap]
rs10518691	0.81[CEU][hapmap]
rs1075178	0.80[EUR][1000 genomes]
rs11070898	0.84[EUR][1000 genomes]
rs11070899	0.84[EUR][1000 genomes]
rs11070900	0.84[EUR][1000 genomes]
rs11631183	0.82[EUR][1000 genomes]
rs11852250	0.82[EUR][1000 genomes]
rs11852556	0.84[EUR][1000 genomes]
rs11852880	0.82[EUR][1000 genomes]
rs11853078	0.82[EUR][1000 genomes]
rs11853114	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11853179	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs11853337	0.81[CEU][hapmap]
rs11853544	0.83[EUR][1000 genomes]
rs11853586	0.87[CEU][hapmap]
rs11853954	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11854130	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs11854247	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs11854405	0.84[EUR][1000 genomes]
rs11854480	0.82[EUR][1000 genomes]
rs11854642	0.82[EUR][1000 genomes]
rs11854673	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs11854780	0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs11855082	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs11855352	0.84[EUR][1000 genomes]
rs11855438	0.84[EUR][1000 genomes]
rs11855453	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs11855467	0.84[EUR][1000 genomes]
rs11855673	0.84[EUR][1000 genomes]
rs11855692	0.82[EUR][1000 genomes]
rs11855820	0.81[CEU][hapmap]
rs11855884	0.80[CEU][hapmap]
rs11856494	0.82[EUR][1000 genomes]
rs11856542	0.82[EUR][1000 genomes]
rs11856588	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs11856626	0.84[EUR][1000 genomes]
rs11856662	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs11856752	0.80[CEU][hapmap]
rs11856810	0.81[CEU][hapmap]
rs11856912	0.82[EUR][1000 genomes]
rs11856989	0.82[EUR][1000 genomes]
rs11857854	0.82[EUR][1000 genomes]
rs11857914	0.82[EUR][1000 genomes]
rs11857993	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs11858031	0.81[CEU][hapmap]
rs1464965	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs1464966	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1474437	0.81[CEU][hapmap]
rs1474438	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs1622405	0.84[EUR][1000 genomes]
rs1693492	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs1693494	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs1693497	0.84[EUR][1000 genomes]
rs1693501	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs1693502	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs1693505	0.82[EUR][1000 genomes]
rs1693506	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs1693507	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs1693510	0.84[EUR][1000 genomes]
rs1693518	0.90[EUR][1000 genomes]
rs1693522	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1693525	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1693526	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1693527	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1724595	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs1724601	0.94[CEU][hapmap];0.82[CHB][hapmap];0.90[EUR][1000 genomes]
rs1724603	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs1724606	0.84[EUR][1000 genomes]
rs1724608	0.84[EUR][1000 genomes]
rs1724616	0.82[EUR][1000 genomes]
rs1724637	0.81[EUR][1000 genomes]
rs1724638	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs17651545	0.82[EUR][1000 genomes]
rs17651581	0.84[EUR][1000 genomes]
rs17651611	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs17651623	0.84[EUR][1000 genomes]
rs17651631	0.84[EUR][1000 genomes]
rs17651692	0.84[EUR][1000 genomes]
rs17651731	0.89[JPT][hapmap]
rs17707912	0.82[EUR][1000 genomes]
rs17707941	0.82[EUR][1000 genomes]
rs17707984	0.82[EUR][1000 genomes]
rs17707996	0.82[EUR][1000 genomes]
rs1815175	0.84[EUR][1000 genomes]
rs1869126	0.80[CEU][hapmap]
rs1869127	0.80[CEU][hapmap]
rs1869128	0.80[CEU][hapmap]
rs2049519	0.80[EUR][1000 genomes]
rs2049520	0.81[EUR][1000 genomes]
rs2140962	0.81[CEU][hapmap]
rs2177876	0.83[EUR][1000 genomes]
rs2246134	0.83[EUR][1000 genomes]
rs2257152	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs2272283	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs2414155	0.82[EUR][1000 genomes]
rs2462857	0.80[EUR][1000 genomes]
rs2554888	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2693462	0.81[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs2693465	0.82[EUR][1000 genomes]
rs2693466	0.82[EUR][1000 genomes]
rs28422901	0.83[EUR][1000 genomes]
rs28519556	0.84[EUR][1000 genomes]
rs2899488	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs2899489	0.82[EUR][1000 genomes]
rs34099958	0.84[EUR][1000 genomes]
rs34113113	0.82[EUR][1000 genomes]
rs34388417	0.95[EUR][1000 genomes]
rs3764227	0.84[EUR][1000 genomes]
rs41408650	0.80[CEU][hapmap]
rs4528515	0.84[EUR][1000 genomes]
rs4547284	0.84[EUR][1000 genomes]
rs4774624	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs4774625	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs4774626	0.84[EUR][1000 genomes]
rs4774627	0.84[EUR][1000 genomes]
rs4776045	0.80[CEU][hapmap]
rs4776048	0.82[EUR][1000 genomes]
rs4776049	0.82[EUR][1000 genomes]
rs4776050	0.82[EUR][1000 genomes]
rs4776051	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs4776053	0.80[CEU][hapmap]
rs4776054	0.84[EUR][1000 genomes]
rs55663209	0.84[EUR][1000 genomes]
rs55710656	0.84[EUR][1000 genomes]
rs55774735	0.82[EUR][1000 genomes]
rs55789576	0.82[EUR][1000 genomes]
rs55842353	0.84[EUR][1000 genomes]
rs55854724	0.84[EUR][1000 genomes]
rs55856498	0.82[EUR][1000 genomes]
rs55876643	0.83[EUR][1000 genomes]
rs55914546	0.84[EUR][1000 genomes]
rs55946989	0.84[EUR][1000 genomes]
rs56017964	0.84[EUR][1000 genomes]
rs56043792	0.84[EUR][1000 genomes]
rs56066720	0.82[EUR][1000 genomes]
rs56124629	0.84[EUR][1000 genomes]
rs56147218	0.82[EUR][1000 genomes]
rs56205481	0.82[EUR][1000 genomes]
rs56206042	0.82[EUR][1000 genomes]
rs56271524	0.82[EUR][1000 genomes]
rs56279946	0.82[EUR][1000 genomes]
rs56317843	0.82[EUR][1000 genomes]
rs56332522	0.81[EUR][1000 genomes]
rs56849428	0.84[EUR][1000 genomes]
rs57138648	0.82[EUR][1000 genomes]
rs57364199	0.82[EUR][1000 genomes]
rs57997370	0.82[EUR][1000 genomes]
rs58388195	0.82[EUR][1000 genomes]
rs58922508	0.81[EUR][1000 genomes]
rs59477983	0.82[EUR][1000 genomes]
rs60607997	0.84[EUR][1000 genomes]
rs61494501	0.84[EUR][1000 genomes]
rs61617647	0.82[EUR][1000 genomes]
rs6493563	0.84[EUR][1000 genomes]
rs66461265	0.84[EUR][1000 genomes]
rs66674706	0.81[EUR][1000 genomes]
rs66755651	0.84[EUR][1000 genomes]
rs66870412	0.82[EUR][1000 genomes]
rs66920283	0.82[EUR][1000 genomes]
rs67028104	0.82[EUR][1000 genomes]
rs67249415	0.81[EUR][1000 genomes]
rs67287941	0.84[EUR][1000 genomes]
rs67423475	0.84[EUR][1000 genomes]
rs67560989	0.82[EUR][1000 genomes]
rs67632670	0.82[EUR][1000 genomes]
rs67732354	0.82[EUR][1000 genomes]
rs67827251	0.84[EUR][1000 genomes]
rs67876506	0.81[EUR][1000 genomes]
rs68061874	0.82[EUR][1000 genomes]
rs72623982	0.80[EUR][1000 genomes]
rs72623984	0.82[EUR][1000 genomes]
rs72623985	0.82[EUR][1000 genomes]
rs72623986	0.84[EUR][1000 genomes]
rs72623987	0.84[EUR][1000 genomes]
rs72623988	0.82[EUR][1000 genomes]
rs72736701	0.81[EUR][1000 genomes]
rs72736702	0.81[EUR][1000 genomes]
rs72738514	0.82[EUR][1000 genomes]
rs72738516	0.82[EUR][1000 genomes]
rs8027927	0.81[EUR][1000 genomes]
rs8030731	0.82[EUR][1000 genomes]
rs940968	0.84[EUR][1000 genomes]
rs940971	0.80[CEU][hapmap]
rs940972	0.80[CEU][hapmap]
rs940973	0.80[CEU][hapmap]
rs9788691	0.84[EUR][1000 genomes]
rs9788777	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	esv1832020	chr15:52702400-52901914	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1047775	chr15:52822050-52912228	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv833006	chr15:52825954-53040462	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1693524	MYO5A	Cis_1M	lymphoblastoid	RTeQTL
rs1693524	ARPP-19	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52822200-52839600	Weak transcription	Right Atrium	heart
2	chr15:52822800-52838400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:52827600-52837200	Weak transcription	A549	lung
4	chr15:52828600-52829800	Enhancers	Liver	Liver
5	chr15:52828800-52850400	Weak transcription	Fetal Brain Male	brain
6	chr15:52829400-52830000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links