Variant report

Variant	rs11899117
Chromosome Location	chr2:37383772-37383773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37374955..37377720-chr2:37382756..37385654,3	MCF-7	breast:
2	chr2:37373517..37380041-chr2:37380520..37385811,10	MCF-7	breast:
3	chr2:37381640..37387428-chr2:37421417..37425727,6	MCF-7	breast:
4	chr2:37372644..37374273-chr2:37382533..37385006,2	K562	blood:
5	chr2:37382658..37387385-chr2:37421093..37425812,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218739	Chromatin interaction
ENSG00000224891	Chromatin interaction
ENSG00000055332	Chromatin interaction
ENSG00000138068	Chromatin interaction
ENSG00000233159	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10187017	0.92[ASN][1000 genomes]
rs10201149	0.91[ASN][1000 genomes]
rs11894414	0.90[ASN][1000 genomes]
rs11894449	0.90[ASN][1000 genomes]
rs11904602	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12475964	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12619587	0.94[ASN][1000 genomes]
rs12620426	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12712526	0.90[ASN][1000 genomes]
rs12992610	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12992818	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12994023	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12994644	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13008236	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13008681	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13020602	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13026696	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13027513	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2014498	0.94[ASN][1000 genomes]
rs2254958	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2270414	0.86[ASN][1000 genomes]
rs3856500	0.93[ASN][1000 genomes]
rs3936292	0.91[ASN][1000 genomes]
rs4670662	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4670663	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4670664	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4670665	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7340267	0.94[ASN][1000 genomes]
rs7575957	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7580127	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7580323	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7580428	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs759667	0.93[ASN][1000 genomes]
rs7606786	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3326671	chr2:37383073-37385621	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11899117	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37382200-37383800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr2:37382400-37383800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr2:37382400-37383800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr2:37382600-37383800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:37382600-37383800	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr2:37382600-37383800	Flanking Active TSS	HUVEC	blood vessel
7	chr2:37382600-37384400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:37382600-37384600	Active TSS	Brain Angular Gyrus	brain
9	chr2:37382800-37383800	Flanking Active TSS	Fetal Thymus	thymus
10	chr2:37382800-37383800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr2:37382800-37384400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:37382800-37384400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:37382800-37384400	Active TSS	GM12878-XiMat	blood
14	chr2:37382800-37384600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:37382800-37384600	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr2:37382800-37384600	Active TSS	Fetal Kidney	kidney
17	chr2:37382800-37384600	Active TSS	A549	lung
18	chr2:37382800-37384800	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr2:37383000-37383800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr2:37383000-37384000	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr2:37383000-37384000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
22	chr2:37383000-37384400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr2:37383000-37384400	Active TSS	NHLF	lung
24	chr2:37383000-37384600	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr2:37383000-37384600	Active TSS	Aorta	Aorta
26	chr2:37383000-37384600	Active TSS	Pancreas	Pancrea
27	chr2:37383000-37384800	Active TSS	HSMM	muscle
28	chr2:37383200-37383800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr2:37383200-37383800	Flanking Active TSS	Primary B cells from peripheral blood	blood
30	chr2:37383200-37383800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
31	chr2:37383200-37383800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
32	chr2:37383200-37383800	Flanking Active TSS	Fetal Brain Male	brain
33	chr2:37383200-37383800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr2:37383200-37384400	Active TSS	Fetal Stomach	stomach
35	chr2:37383200-37384400	Active TSS	Gastric	stomach
36	chr2:37383200-37384400	Active TSS	Placenta Amnion	Placenta Amnion
37	chr2:37383200-37384600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr2:37383200-37384600	Active TSS	Left Ventricle	heart
39	chr2:37383200-37384600	Active TSS	Lung	lung
40	chr2:37383200-37384800	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr2:37383200-37384800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr2:37383200-37384800	Flanking Active TSS	Primary B cells from cord blood	blood
43	chr2:37383200-37385000	Active TSS	Ovary	ovary
44	chr2:37383400-37384000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr2:37383400-37384400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr2:37383400-37384400	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr2:37383400-37384400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
48	chr2:37383400-37384400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr2:37383400-37384400	Active TSS	Muscle Satellite Cultured Cells	--
50	chr2:37383400-37384400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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