Variant report

Variant	rs7606786
Chromosome Location	chr2:37382989-37382990
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37374955..37377720-chr2:37382756..37385654,3	MCF-7	breast:
2	chr2:37382080..37383766-chr2:37457653..37460217,2	MCF-7	breast:
3	chr2:37373517..37380041-chr2:37380520..37385811,10	MCF-7	breast:
4	chr2:37381640..37387428-chr2:37421417..37425727,6	MCF-7	breast:
5	chr2:37353750..37355399-chr2:37381994..37383534,2	MCF-7	breast:
6	chr2:37372644..37374273-chr2:37382533..37385006,2	K562	blood:
7	chr2:37382658..37387385-chr2:37421093..37425812,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115816	Chromatin interaction
ENSG00000233159	Chromatin interaction
ENSG00000218739	Chromatin interaction
ENSG00000138068	Chromatin interaction
ENSG00000055332	Chromatin interaction
ENSG00000224891	Chromatin interaction
ENSG00000003509	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10187017	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10201149	0.81[ASN][1000 genomes]
rs11894414	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11894449	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11899117	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11904602	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12475964	0.80[ASN][1000 genomes]
rs12619587	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12620426	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12712526	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12992610	0.83[ASN][1000 genomes]
rs12992818	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12994023	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12994644	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13008236	0.85[ASN][1000 genomes]
rs13008681	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13020602	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13026696	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13027513	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2014498	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2254958	0.94[ASN][1000 genomes]
rs2270414	0.91[ASN][1000 genomes]
rs3856500	0.81[ASN][1000 genomes]
rs3936292	0.81[ASN][1000 genomes]
rs4670662	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4670663	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4670664	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4670665	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4670666	0.81[ASN][1000 genomes]
rs72790618	0.81[ASN][1000 genomes]
rs7340267	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7575957	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7580127	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7580323	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7580428	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs759667	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7606786	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37312200-37383200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:37336400-37383200	Weak transcription	Psoas Muscle	Psoas
3	chr2:37355000-37383200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:37361800-37383200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:37365800-37383600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:37371200-37383200	Weak transcription	Colonic Mucosa	Colon
7	chr2:37372200-37383200	Weak transcription	Gastric	stomach
8	chr2:37372600-37383200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:37374400-37383200	Weak transcription	NH-A	brain
10	chr2:37375000-37383200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:37375200-37383000	Weak transcription	Thymus	Thymus
12	chr2:37375800-37383000	Weak transcription	HSMMtube	muscle
13	chr2:37375800-37383200	Weak transcription	Lung	lung
14	chr2:37376400-37383000	Weak transcription	Aorta	Aorta
15	chr2:37376400-37383000	Weak transcription	Placenta	Placenta
16	chr2:37377000-37383000	Weak transcription	Pancreas	Pancrea
17	chr2:37377200-37383000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr2:37377200-37383000	Weak transcription	HSMM	muscle
19	chr2:37377200-37383200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr2:37378600-37383000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr2:37378800-37383000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr2:37379800-37383200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr2:37380600-37383200	Weak transcription	Ovary	ovary
24	chr2:37381000-37383000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr2:37381200-37383200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr2:37381200-37383200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:37381600-37383200	Enhancers	Primary B cells from peripheral blood	blood
28	chr2:37381600-37383200	Enhancers	Primary T cells fromperipheralblood	blood
29	chr2:37382000-37383000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:37382000-37383000	Enhancers	Right Ventricle	heart
31	chr2:37382000-37383200	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr2:37382000-37383200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr2:37382000-37383200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr2:37382200-37383000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr2:37382200-37383000	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr2:37382200-37383000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr2:37382200-37383000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr2:37382200-37383000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr2:37382200-37383000	Enhancers	Colon Smooth Muscle	Colon
40	chr2:37382200-37383000	Enhancers	Fetal Brain Female	brain
41	chr2:37382200-37383000	Enhancers	Left Ventricle	heart
42	chr2:37382200-37383000	Enhancers	Stomach Smooth Muscle	stomach
43	chr2:37382200-37383000	Enhancers	NHDF-Ad	bronchial
44	chr2:37382200-37383200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr2:37382200-37383200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr2:37382200-37383200	Enhancers	Primary B cells from cord blood	blood
47	chr2:37382200-37383200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr2:37382200-37383200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr2:37382200-37383200	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr2:37382200-37383200	Enhancers	Right Atrium	heart

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