Variant report

Variant	rs13027513
Chromosome Location	chr2:37382576-37382577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37382080..37383766-chr2:37457653..37460217,2	MCF-7	breast:
2	chr2:37373517..37380041-chr2:37380520..37385811,10	MCF-7	breast:
3	chr2:37381640..37387428-chr2:37421417..37425727,6	MCF-7	breast:
4	chr2:37353750..37355399-chr2:37381994..37383534,2	MCF-7	breast:
5	chr2:37372644..37374273-chr2:37382533..37385006,2	K562	blood:
6	chr2:37376581..37378204-chr2:37381063..37382727,2	K562	blood:

Variant related genes	Relation type
ENSG00000233159	Chromatin interaction
ENSG00000003509	Chromatin interaction
ENSG00000055332	Chromatin interaction
ENSG00000138068	Chromatin interaction
ENSG00000115816	Chromatin interaction
ENSG00000218739	Chromatin interaction
ENSG00000224891	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10187017	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10201149	0.84[ASN][1000 genomes]
rs11894414	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11894449	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11899117	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11904602	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12475964	0.83[ASN][1000 genomes]
rs12619587	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12620426	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12712526	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12992610	0.86[ASN][1000 genomes]
rs12992818	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12994023	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12994644	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13008236	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13008681	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13020602	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13026696	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2014498	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2254958	0.97[ASN][1000 genomes]
rs2270414	0.95[ASN][1000 genomes]
rs3856500	0.84[ASN][1000 genomes]
rs3936292	0.84[ASN][1000 genomes]
rs4670662	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4670663	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670664	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4670665	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670666	0.84[ASN][1000 genomes]
rs72790618	0.84[ASN][1000 genomes]
rs7340267	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7575957	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7580127	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7580323	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7580428	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs759667	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7606786	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37312200-37383200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:37336400-37383200	Weak transcription	Psoas Muscle	Psoas
3	chr2:37355000-37383200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:37361800-37383200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:37363600-37382600	Weak transcription	Esophagus	oesophagus
6	chr2:37365800-37383600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:37371200-37383200	Weak transcription	Colonic Mucosa	Colon
8	chr2:37372200-37383200	Weak transcription	Gastric	stomach
9	chr2:37372600-37383200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:37374000-37382600	Weak transcription	Fetal Heart	heart
11	chr2:37374400-37382600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr2:37374400-37383200	Weak transcription	NH-A	brain
13	chr2:37375000-37382800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr2:37375000-37383200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr2:37375200-37382600	Weak transcription	Fetal Kidney	kidney
16	chr2:37375200-37383000	Weak transcription	Thymus	Thymus
17	chr2:37375800-37383000	Weak transcription	HSMMtube	muscle
18	chr2:37375800-37383200	Weak transcription	Lung	lung
19	chr2:37376000-37382600	Weak transcription	Brain Substantia Nigra	brain
20	chr2:37376000-37382600	Weak transcription	Fetal Lung	lung
21	chr2:37376200-37382600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:37376200-37382600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr2:37376200-37382600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr2:37376400-37382800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr2:37376400-37383000	Weak transcription	Aorta	Aorta
26	chr2:37376400-37383000	Weak transcription	Placenta	Placenta
27	chr2:37377000-37382600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:37377000-37383000	Weak transcription	Pancreas	Pancrea
29	chr2:37377200-37383000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr2:37377200-37383000	Weak transcription	HSMM	muscle
31	chr2:37377200-37383200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr2:37377400-37382600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr2:37377400-37382600	Weak transcription	K562	blood
34	chr2:37378000-37382600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr2:37378000-37382600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr2:37378400-37382600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr2:37378600-37383000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr2:37378800-37383000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr2:37379600-37382600	Weak transcription	Fetal Thymus	thymus
40	chr2:37379800-37383200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr2:37380400-37382600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr2:37380600-37383200	Weak transcription	Ovary	ovary
43	chr2:37381000-37382600	Weak transcription	NHLF	lung
44	chr2:37381000-37383000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr2:37381200-37382600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr2:37381200-37382800	Weak transcription	Fetal Brain Male	brain
47	chr2:37381200-37383200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr2:37381200-37383200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr2:37381600-37382600	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr2:37381600-37382600	Enhancers	Primary hematopoietic stem cells	blood

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