Variant report

Variant	rs3936292
Chromosome Location	chr2:37387486-37387487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr2:37387323-37387499	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:37385156..37387851-chr2:37415682..37418467,2	K562	blood:
2	chr2:37382848..37386165-chr2:37386168..37391618,9	MCF-7	breast:
3	chr2:37387188..37389991-chr2:37393391..37396132,3	MCF-7	breast:
4	chr2:37375493..37378915-chr2:37383921..37387868,3	K562	blood:
5	chr2:37385569..37388130-chr2:37422191..37423882,2	K562	blood:

No data

Variant related genes	Relation type
EIF2AK2	TF binding region
ENSG00000224891	Chromatin interaction
ENSG00000218739	Chromatin interaction
ENSG00000055332	Chromatin interaction
ENSG00000138068	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10187017	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10201149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894414	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11894449	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11899117	0.91[ASN][1000 genomes]
rs11904602	0.91[ASN][1000 genomes]
rs12475964	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12619587	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12620426	0.97[CHD][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12712526	0.89[CEU][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12992610	0.93[ASN][1000 genomes]
rs12992818	0.93[ASN][1000 genomes]
rs12994023	0.95[ASN][1000 genomes]
rs12994644	0.84[ASN][1000 genomes]
rs13008236	0.95[ASN][1000 genomes]
rs13008681	0.91[ASN][1000 genomes]
rs13020602	0.84[ASN][1000 genomes]
rs13026696	0.84[ASN][1000 genomes]
rs13027513	0.84[ASN][1000 genomes]
rs2014498	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2254958	0.93[CHD][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs2270414	0.83[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3856500	0.92[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4670662	0.83[ASN][1000 genomes]
rs4670663	0.84[ASN][1000 genomes]
rs4670664	0.82[ASN][1000 genomes]
rs4670665	0.84[ASN][1000 genomes]
rs7340267	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7575957	0.83[ASN][1000 genomes]
rs7580127	0.84[ASN][1000 genomes]
rs7580323	0.84[ASN][1000 genomes]
rs759667	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7606786	0.81[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37385000-37388400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:37385800-37389000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:37387200-37387600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:37387200-37387600	Enhancers	Esophagus	oesophagus

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