Variant report

Variant	rs2254958
Chromosome Location	chr2:37376291-37376292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:37375942-37376424	GM12878	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:37375493..37378915-chr2:37383921..37387868,3	K562	blood:
2	chr2:37373517..37380041-chr2:37380520..37385811,10	MCF-7	breast:
3	chr2:37375443..37378209-chr2:37422439..37424991,2	MCF-7	breast:
4	chr2:37374955..37377720-chr2:37382756..37385654,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC007390.5.1-4	chr2:37375673-37376447	NONHSAT070097

No data

Variant related genes	Relation type
EIF2AK2	TF binding region
ENSG00000055332	Chromatin interaction
ENSG00000218739	Chromatin interaction
ENSG00000138068	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10187017	0.83[ASN][1000 genomes]
rs10201149	0.83[ASN][1000 genomes]
rs1060957	0.84[CEU][hapmap]
rs11894414	0.96[ASN][1000 genomes]
rs11894449	0.96[ASN][1000 genomes]
rs11899117	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11904602	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12475964	0.84[ASN][1000 genomes]
rs12619587	0.84[ASN][1000 genomes]
rs12620426	0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12712526	0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12992610	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12992818	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12994023	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12994644	0.97[ASN][1000 genomes]
rs13008236	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13008681	0.90[ASN][1000 genomes]
rs13020602	0.97[ASN][1000 genomes]
rs13026696	0.97[ASN][1000 genomes]
rs13027513	0.97[ASN][1000 genomes]
rs17445820	0.83[CEU][hapmap]
rs2014498	0.84[ASN][1000 genomes]
rs2270414	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2540992	0.81[CEU][hapmap]
rs3856500	0.84[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs3936292	0.93[CHD][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs4670662	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4670663	0.97[ASN][1000 genomes]
rs4670664	0.96[ASN][1000 genomes]
rs4670665	0.97[ASN][1000 genomes]
rs4670666	0.82[ASN][1000 genomes]
rs72790618	0.82[ASN][1000 genomes]
rs7340267	0.84[ASN][1000 genomes]
rs7575957	0.96[ASN][1000 genomes]
rs7580127	0.97[ASN][1000 genomes]
rs7580323	0.97[ASN][1000 genomes]
rs7580428	0.92[ASN][1000 genomes]
rs759667	0.83[ASN][1000 genomes]
rs7606786	0.94[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2254958	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL
rs2254958	CEBPZ	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37312200-37383200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:37319200-37377200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr2:37333200-37379600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:37336400-37383200	Weak transcription	Psoas Muscle	Psoas
5	chr2:37339800-37376800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:37342400-37376400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:37342400-37376400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr2:37342400-37376600	Strong transcription	Sigmoid Colon	Sigmoid Colon
9	chr2:37347600-37376400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:37347800-37376400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:37347800-37376400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr2:37348400-37377000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:37348600-37376600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:37348600-37377200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr2:37348600-37377400	Strong transcription	Dnd41	blood
16	chr2:37348800-37376400	Strong transcription	Fetal Muscle Trunk	muscle
17	chr2:37348800-37376600	Strong transcription	Fetal Thymus	thymus
18	chr2:37348800-37376800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:37353000-37377200	Strong transcription	Fetal Muscle Leg	muscle
20	chr2:37355000-37383200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr2:37355200-37376800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:37356800-37377000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr2:37358200-37376600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:37361800-37383200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr2:37362200-37376800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr2:37362800-37378400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr2:37363600-37382600	Weak transcription	Esophagus	oesophagus
28	chr2:37365800-37383600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr2:37367600-37376800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr2:37368400-37376400	Strong transcription	Fetal Stomach	stomach
31	chr2:37369800-37376400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr2:37370200-37377200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr2:37370400-37377200	Strong transcription	Osteobl	bone
34	chr2:37370800-37376400	Strong transcription	Primary hematopoietic stem cells	blood
35	chr2:37371200-37383200	Weak transcription	Colonic Mucosa	Colon
36	chr2:37371600-37376400	Strong transcription	NHLF	lung
37	chr2:37371800-37376400	Strong transcription	Aorta	Aorta
38	chr2:37372000-37376600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:37372200-37377200	Strong transcription	HSMM	muscle
40	chr2:37372200-37383200	Weak transcription	Gastric	stomach
41	chr2:37372600-37382200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr2:37372600-37383200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr2:37373000-37376400	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr2:37373000-37377200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr2:37373200-37376600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr2:37373200-37376800	Strong transcription	NHEK	skin
47	chr2:37373200-37377200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr2:37373200-37377200	Strong transcription	HMEC	breast
49	chr2:37373800-37376800	Weak transcription	Stomach Mucosa	stomach
50	chr2:37373800-37377000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links