Variant report

Variant	rs759667
Chromosome Location	chr2:37386368-37386369
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr2:37386343-37386404	HepG2	liver:	n/a	chr2:37386355-37386366

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:37370415..37372075-chr2:37384482..37387450,2	K562	blood:
2	chr2:37385156..37387851-chr2:37415682..37418467,2	K562	blood:
3	chr2:37382848..37386165-chr2:37386168..37391618,9	MCF-7	breast:
4	chr2:37381640..37387428-chr2:37421417..37425727,6	MCF-7	breast:
5	chr2:37375493..37378915-chr2:37383921..37387868,3	K562	blood:
6	chr2:37385569..37388130-chr2:37422191..37423882,2	K562	blood:
7	chr2:37382658..37387385-chr2:37421093..37425812,6	MCF-7	breast:

No data

Variant related genes	Relation type
EIF2AK2	TF binding region
ENSG00000055332	Chromatin interaction
ENSG00000233159	Chromatin interaction
ENSG00000138068	Chromatin interaction
ENSG00000218739	Chromatin interaction
ENSG00000224891	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10187017	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10201149	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11894414	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11894449	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11899117	0.93[ASN][1000 genomes]
rs11904602	0.93[ASN][1000 genomes]
rs12475964	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12619587	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12620426	0.85[ASN][1000 genomes]
rs12712526	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12992610	0.95[ASN][1000 genomes]
rs12992818	0.95[ASN][1000 genomes]
rs12994023	0.96[ASN][1000 genomes]
rs12994644	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13008236	0.96[ASN][1000 genomes]
rs13008681	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13020602	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13026696	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13027513	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2014498	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2254958	0.83[ASN][1000 genomes]
rs2270414	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3856500	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3936292	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4670662	0.85[ASN][1000 genomes]
rs4670663	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4670664	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4670665	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62133148	0.81[ASN][1000 genomes]
rs7340267	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7575957	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7580127	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7580323	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7580428	0.81[ASN][1000 genomes]
rs7606786	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37384800-37387200	Weak transcription	Esophagus	oesophagus
2	chr2:37385000-37386600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:37385000-37386600	Enhancers	Brain Angular Gyrus	brain
4	chr2:37385000-37386600	Enhancers	Brain Cingulate Gyrus	brain
5	chr2:37385000-37387200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:37385000-37388400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr2:37385800-37389000	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links