Variant report

Variant	rs1192046
Chromosome Location	chr6:72094704-72094705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72093309..72094922-chr6:72219520..72220483,12	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1192035	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1192036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1192039	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1192042	0.95[EUR][1000 genomes]
rs1192043	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1192044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs828637	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs828640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs828641	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs828643	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs828646	0.85[AMR][1000 genomes]
rs828647	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs828659	1.00[AFR][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72061600-72097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:72076200-72103200	Weak transcription	Aorta	Aorta
3	chr6:72077600-72094800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:72077800-72097000	Weak transcription	Psoas Muscle	Psoas
5	chr6:72077800-72097200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:72078200-72095400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:72079800-72098800	Weak transcription	Brain Substantia Nigra	brain
8	chr6:72083800-72097800	Weak transcription	Placenta	Placenta
9	chr6:72084200-72097000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:72084200-72106600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:72084400-72094800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:72084400-72094800	Weak transcription	Fetal Intestine Small	intestine
13	chr6:72084400-72099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:72085600-72096800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:72085800-72105400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:72087400-72098200	Weak transcription	Colonic Mucosa	Colon
17	chr6:72088400-72097800	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:72088600-72097000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:72088800-72095000	Weak transcription	HSMMtube	muscle
20	chr6:72088800-72101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:72090400-72101000	Weak transcription	Gastric	stomach
22	chr6:72091000-72095200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:72091200-72095600	Weak transcription	NHEK	skin
24	chr6:72091400-72095200	Weak transcription	NH-A	brain
25	chr6:72091800-72097200	Weak transcription	Fetal Stomach	stomach
26	chr6:72093400-72101200	Genic enhancers	Hela-S3	cervix
27	chr6:72093400-72106400	Weak transcription	Spleen	Spleen
28	chr6:72093600-72094800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:72093600-72094800	Weak transcription	Fetal Kidney	kidney
30	chr6:72093600-72094800	Enhancers	A549	lung
31	chr6:72093600-72094800	Weak transcription	NHDF-Ad	bronchial
32	chr6:72093600-72095400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:72093600-72096200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:72093600-72097800	Weak transcription	Left Ventricle	heart
35	chr6:72093600-72097800	Weak transcription	Pancreas	Pancrea
36	chr6:72093600-72097800	Weak transcription	Right Ventricle	heart
37	chr6:72093600-72099000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr6:72093600-72099000	Weak transcription	Lung	lung
39	chr6:72093600-72099200	Enhancers	HMEC	breast
40	chr6:72093800-72095000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:72093800-72097200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:72094000-72094800	Weak transcription	Brain Hippocampus Middle	brain
43	chr6:72094000-72095800	Enhancers	Fetal Lung	lung
44	chr6:72094000-72096000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:72094000-72096000	Enhancers	HUVEC	blood vessel
46	chr6:72094000-72097800	Weak transcription	Brain Anterior Caudate	brain
47	chr6:72094000-72099200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:72094000-72105200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:72094200-72094800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:72094200-72095200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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