Variant report

Variant	rs828646
Chromosome Location	chr6:72083337-72083338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-3	chr6:72082956-72084734	NONHSAT113496
2	lnc-B3GAT2-3	chr6:72083205-72083856	NONHSAT113497

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1192035	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192036	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192039	0.92[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192041	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1192042	1.00[ASN][1000 genomes]
rs1192043	1.00[ASN][1000 genomes]
rs1192044	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1192046	0.85[AMR][1000 genomes]
rs1192051	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1322763	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1405847	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6923579	0.90[EUR][1000 genomes]
rs701695	1.00[ASN][1000 genomes]
rs73520608	1.00[ASN][1000 genomes]
rs765466	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs828639	1.00[ASN][1000 genomes]
rs828640	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs828641	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828643	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828645	1.00[ASN][1000 genomes]
rs828647	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs828656	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs828658	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs828659	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs828661	0.89[EUR][1000 genomes]
rs828663	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9446370	1.00[JPT][hapmap]
rs9446392	1.00[JPT][hapmap]
rs9446393	1.00[JPT][hapmap]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72061600-72097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:72071400-72085200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:72071600-72083600	Weak transcription	Placenta	Placenta
4	chr6:72075400-72087200	Weak transcription	Fetal Heart	heart
5	chr6:72076000-72083800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:72076000-72084000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:72076000-72093400	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:72076200-72083800	Weak transcription	NH-A	brain
9	chr6:72076200-72103200	Weak transcription	Aorta	Aorta
10	chr6:72076600-72083400	Weak transcription	Adipose Nuclei	Adipose
11	chr6:72076600-72087600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:72076600-72090200	Weak transcription	Ovary	ovary
13	chr6:72077000-72084000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:72077600-72084000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:72077600-72085400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:72077600-72093400	Weak transcription	Brain Anterior Caudate	brain
17	chr6:72077600-72094800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:72077800-72083800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:72077800-72087800	Weak transcription	Right Ventricle	heart
20	chr6:72077800-72088000	Weak transcription	Left Ventricle	heart
21	chr6:72077800-72093000	Weak transcription	Lung	lung
22	chr6:72077800-72093200	Weak transcription	Pancreas	Pancrea
23	chr6:72077800-72097000	Weak transcription	Psoas Muscle	Psoas
24	chr6:72077800-72097200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:72078000-72083800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:72078200-72084000	Weak transcription	NHDF-Ad	bronchial
27	chr6:72078200-72095400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:72078400-72083600	Weak transcription	A549	lung
29	chr6:72078400-72083800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:72078800-72083800	Weak transcription	NHEK	skin
31	chr6:72079800-72098800	Weak transcription	Brain Substantia Nigra	brain
32	chr6:72080200-72083400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:72080400-72084400	Strong transcription	HSMM	muscle
34	chr6:72081200-72084400	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr6:72081200-72087800	Weak transcription	HSMMtube	muscle
36	chr6:72081400-72091400	Strong transcription	Hela-S3	cervix
37	chr6:72081600-72084400	Weak transcription	Fetal Brain Male	brain
38	chr6:72082000-72083600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr6:72082000-72087000	Weak transcription	Fetal Kidney	kidney
40	chr6:72082200-72083600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:72082200-72084000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:72082200-72090800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:72082400-72083400	Weak transcription	HMEC	breast
44	chr6:72082400-72083800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:72082400-72083800	Weak transcription	Fetal Lung	lung
46	chr6:72082400-72088000	Weak transcription	Liver	Liver
47	chr6:72082600-72083800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:72082600-72093200	Weak transcription	Osteobl	bone
49	chr6:72082800-72085200	Weak transcription	HUVEC	blood vessel
50	chr6:72082800-72086200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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