Variant report

Variant	rs73520608
Chromosome Location	chr6:72100473-72100474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1192035	1.00[ASN][1000 genomes]
rs1192036	1.00[ASN][1000 genomes]
rs1192039	1.00[ASN][1000 genomes]
rs1192041	1.00[ASN][1000 genomes]
rs1192042	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1192043	1.00[ASN][1000 genomes]
rs1192044	1.00[ASN][1000 genomes]
rs1405847	1.00[ASN][1000 genomes]
rs16880824	0.91[AFR][1000 genomes]
rs701695	1.00[ASN][1000 genomes]
rs73510427	0.83[AFR][1000 genomes]
rs765466	1.00[ASN][1000 genomes]
rs828639	1.00[ASN][1000 genomes]
rs828640	1.00[ASN][1000 genomes]
rs828641	1.00[ASN][1000 genomes]
rs828643	1.00[ASN][1000 genomes]
rs828645	1.00[ASN][1000 genomes]
rs828646	1.00[ASN][1000 genomes]
rs9446387	0.82[AFR][1000 genomes]
rs9446392	0.92[EUR][1000 genomes]
rs9446393	0.92[EUR][1000 genomes]
rs9455452	0.91[AFR][1000 genomes]
rs9455465	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72076200-72103200	Weak transcription	Aorta	Aorta
2	chr6:72084200-72106600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:72085800-72105400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:72088800-72101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:72090400-72101000	Weak transcription	Gastric	stomach
6	chr6:72093400-72101200	Genic enhancers	Hela-S3	cervix
7	chr6:72093400-72106400	Weak transcription	Spleen	Spleen
8	chr6:72094000-72105200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:72095000-72103600	Weak transcription	Stomach Mucosa	stomach
10	chr6:72095400-72103600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:72096800-72106000	Enhancers	Adipose Nuclei	Adipose
12	chr6:72097000-72101800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:72097000-72102000	Enhancers	Liver	Liver
14	chr6:72097200-72102400	Genic enhancers	A549	lung
15	chr6:72097400-72102600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:72097600-72103400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:72098200-72104800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:72098400-72100600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:72098400-72100800	Weak transcription	HSMMtube	muscle
20	chr6:72098400-72102600	Weak transcription	Placenta	Placenta
21	chr6:72098400-72102600	Weak transcription	Small Intestine	intestine
22	chr6:72098400-72103200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:72098400-72105400	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:72098400-72117200	Weak transcription	Pancreas	Pancrea
25	chr6:72098600-72102800	Weak transcription	Fetal Stomach	stomach
26	chr6:72098600-72103000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:72098600-72103600	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:72098800-72101400	Weak transcription	NHLF	lung
29	chr6:72098800-72103800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:72099000-72100800	Weak transcription	Fetal Lung	lung
31	chr6:72099000-72101400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:72099000-72101800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:72099000-72102600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:72099000-72102600	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:72099000-72103000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:72099200-72100800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:72099200-72101000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:72099200-72101000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:72099200-72101000	Weak transcription	HMEC	breast
40	chr6:72099200-72101200	Weak transcription	Right Atrium	heart
41	chr6:72099200-72101400	Weak transcription	Osteobl	bone
42	chr6:72099200-72101800	Weak transcription	NHDF-Ad	bronchial
43	chr6:72099200-72102000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:72099200-72102600	Weak transcription	Fetal Heart	heart
45	chr6:72099200-72102600	Weak transcription	NH-A	brain
46	chr6:72099200-72106200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:72099400-72100600	Weak transcription	HUVEC	blood vessel
48	chr6:72099400-72101200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:72099400-72103200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:72099400-72103200	Weak transcription	NHEK	skin

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