Variant report

Variant	rs828643
Chromosome Location	chr6:72081436-72081437
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1192035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192036	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192039	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192041	1.00[ASN][1000 genomes]
rs1192042	1.00[ASN][1000 genomes]
rs1192043	1.00[ASN][1000 genomes]
rs1192044	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1192046	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1192051	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1322763	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1405847	1.00[ASN][1000 genomes]
rs6923579	0.93[EUR][1000 genomes]
rs701695	1.00[ASN][1000 genomes]
rs73520608	1.00[ASN][1000 genomes]
rs765466	1.00[ASN][1000 genomes]
rs828637	1.00[AFR][1000 genomes]
rs828639	1.00[ASN][1000 genomes]
rs828640	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs828641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828645	1.00[ASN][1000 genomes]
rs828646	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs828656	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs828658	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs828659	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs828661	0.92[EUR][1000 genomes]
rs828663	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72061600-72097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:72071400-72085200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:72071600-72083600	Weak transcription	Placenta	Placenta
4	chr6:72075400-72087200	Weak transcription	Fetal Heart	heart
5	chr6:72076000-72083800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:72076000-72084000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:72076000-72093400	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:72076200-72083800	Weak transcription	NH-A	brain
9	chr6:72076200-72103200	Weak transcription	Aorta	Aorta
10	chr6:72076600-72083400	Weak transcription	Adipose Nuclei	Adipose
11	chr6:72076600-72087600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:72076600-72090200	Weak transcription	Ovary	ovary
13	chr6:72077000-72084000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:72077200-72081800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:72077600-72084000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:72077600-72085400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:72077600-72093400	Weak transcription	Brain Anterior Caudate	brain
18	chr6:72077600-72094800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:72077800-72083800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:72077800-72087800	Weak transcription	Right Ventricle	heart
21	chr6:72077800-72088000	Weak transcription	Left Ventricle	heart
22	chr6:72077800-72093000	Weak transcription	Lung	lung
23	chr6:72077800-72093200	Weak transcription	Pancreas	Pancrea
24	chr6:72077800-72097000	Weak transcription	Psoas Muscle	Psoas
25	chr6:72077800-72097200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:72078000-72083800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:72078200-72084000	Weak transcription	NHDF-Ad	bronchial
28	chr6:72078200-72095400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:72078400-72083600	Weak transcription	A549	lung
30	chr6:72078400-72083800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:72078800-72083800	Weak transcription	NHEK	skin
32	chr6:72079400-72082000	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:72079400-72082400	Strong transcription	HMEC	breast
34	chr6:72079600-72082000	Strong transcription	Fetal Kidney	kidney
35	chr6:72079800-72082800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:72079800-72098800	Weak transcription	Brain Substantia Nigra	brain
37	chr6:72080200-72082600	Strong transcription	Osteobl	bone
38	chr6:72080200-72083400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:72080400-72082200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:72080400-72082400	Strong transcription	Liver	Liver
41	chr6:72080400-72084400	Strong transcription	HSMM	muscle
42	chr6:72080600-72082200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:72081000-72082400	Strong transcription	Fetal Lung	lung
44	chr6:72081000-72082600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:72081200-72082000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr6:72081200-72084400	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr6:72081200-72087800	Weak transcription	HSMMtube	muscle
48	chr6:72081400-72081600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:72081400-72082800	Strong transcription	HUVEC	blood vessel
50	chr6:72081400-72091400	Strong transcription	Hela-S3	cervix

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