Variant report

Variant	rs1192044
Chromosome Location	chr6:72093176-72093177
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71900253..71901062-chr6:72093080..72093934,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1192035	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1192036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192039	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192041	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1192042	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192043	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1405847	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs701695	1.00[ASN][1000 genomes]
rs73520608	1.00[ASN][1000 genomes]
rs765466	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs828637	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs828639	1.00[ASN][1000 genomes]
rs828640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828641	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs828643	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs828645	1.00[ASN][1000 genomes]
rs828646	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs828647	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs828659	1.00[AFR][1000 genomes]
rs9446370	1.00[JPT][hapmap]
rs9446392	1.00[JPT][hapmap]
rs9446393	1.00[JPT][hapmap]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72061600-72097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:72076000-72093400	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:72076200-72103200	Weak transcription	Aorta	Aorta
4	chr6:72077600-72093400	Weak transcription	Brain Anterior Caudate	brain
5	chr6:72077600-72094800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:72077800-72093200	Weak transcription	Pancreas	Pancrea
7	chr6:72077800-72097000	Weak transcription	Psoas Muscle	Psoas
8	chr6:72077800-72097200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:72078200-72095400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:72079800-72098800	Weak transcription	Brain Substantia Nigra	brain
11	chr6:72082600-72093200	Weak transcription	Osteobl	bone
12	chr6:72083400-72094600	Weak transcription	Fetal Intestine Large	intestine
13	chr6:72083800-72097800	Weak transcription	Placenta	Placenta
14	chr6:72084200-72097000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:72084200-72106600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:72084400-72093400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:72084400-72094800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr6:72084400-72094800	Weak transcription	Fetal Intestine Small	intestine
19	chr6:72084400-72099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:72085600-72096800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:72085800-72105400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:72087000-72093200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:72087400-72098200	Weak transcription	Colonic Mucosa	Colon
24	chr6:72088000-72093400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:72088400-72097800	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:72088600-72093600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:72088600-72097000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:72088800-72093200	Weak transcription	Right Ventricle	heart
29	chr6:72088800-72095000	Weak transcription	HSMMtube	muscle
30	chr6:72088800-72101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:72089000-72093800	Weak transcription	Liver	Liver
32	chr6:72090400-72101000	Weak transcription	Gastric	stomach
33	chr6:72091000-72094600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:72091000-72095200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:72091200-72093400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:72091200-72093800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:72091200-72093800	Weak transcription	NHLF	lung
38	chr6:72091200-72094000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:72091200-72094600	Weak transcription	Adipose Nuclei	Adipose
40	chr6:72091200-72095600	Weak transcription	NHEK	skin
41	chr6:72091400-72095200	Weak transcription	NH-A	brain
42	chr6:72091600-72093200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:72091800-72097200	Weak transcription	Fetal Stomach	stomach
44	chr6:72092200-72093200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:72092200-72093200	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr6:72092200-72093400	Strong transcription	Hela-S3	cervix
47	chr6:72092400-72093200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:72092600-72093200	Weak transcription	Spleen	Spleen
49	chr6:72092600-72093200	Strong transcription	A549	lung
50	chr6:72092600-72093400	Strong transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links