Variant report

Variant	rs1192039
Chromosome Location	chr6:72087957-72087958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:72087849-72088284	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr6:72087149-72088925	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
MIR30C2	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1192035	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192036	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192041	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1192042	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192043	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192044	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1192046	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1405847	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs701695	1.00[ASN][1000 genomes]
rs73520608	1.00[ASN][1000 genomes]
rs765466	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs828637	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs828639	1.00[ASN][1000 genomes]
rs828640	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828641	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828643	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828645	1.00[ASN][1000 genomes]
rs828646	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828647	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9446370	1.00[JPT][hapmap]
rs9446392	1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs9446393	1.00[JPT][hapmap]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72061600-72097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:72076000-72093400	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:72076200-72103200	Weak transcription	Aorta	Aorta
4	chr6:72076600-72090200	Weak transcription	Ovary	ovary
5	chr6:72077600-72093400	Weak transcription	Brain Anterior Caudate	brain
6	chr6:72077600-72094800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:72077800-72088000	Weak transcription	Left Ventricle	heart
8	chr6:72077800-72093000	Weak transcription	Lung	lung
9	chr6:72077800-72093200	Weak transcription	Pancreas	Pancrea
10	chr6:72077800-72097000	Weak transcription	Psoas Muscle	Psoas
11	chr6:72077800-72097200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:72078200-72095400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:72079800-72098800	Weak transcription	Brain Substantia Nigra	brain
14	chr6:72081400-72091400	Strong transcription	Hela-S3	cervix
15	chr6:72082200-72090800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:72082400-72088000	Weak transcription	Liver	Liver
17	chr6:72082600-72093200	Weak transcription	Osteobl	bone
18	chr6:72083400-72094600	Weak transcription	Fetal Intestine Large	intestine
19	chr6:72083800-72097800	Weak transcription	Placenta	Placenta
20	chr6:72084200-72090800	Weak transcription	NHLF	lung
21	chr6:72084200-72097000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:72084200-72106600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:72084400-72088000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:72084400-72090400	Weak transcription	Adipose Nuclei	Adipose
25	chr6:72084400-72090400	Weak transcription	NH-A	brain
26	chr6:72084400-72092600	Weak transcription	Fetal Lung	lung
27	chr6:72084400-72093400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:72084400-72094800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:72084400-72094800	Weak transcription	Fetal Intestine Small	intestine
30	chr6:72084400-72099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:72084600-72090800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:72085200-72088400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:72085400-72091000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:72085600-72096800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:72085800-72105400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:72086200-72090400	Weak transcription	NHEK	skin
37	chr6:72086200-72091000	Strong transcription	HSMM	muscle
38	chr6:72086200-72093000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:72086400-72088800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:72086800-72088200	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr6:72086800-72088800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr6:72086800-72089000	Strong transcription	HUVEC	blood vessel
43	chr6:72087000-72089000	Genic enhancers	Fetal Kidney	kidney
44	chr6:72087000-72093200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:72087200-72089400	Strong transcription	NHDF-Ad	bronchial
46	chr6:72087200-72090600	Strong transcription	A549	lung
47	chr6:72087400-72091000	Strong transcription	HMEC	breast
48	chr6:72087400-72098200	Weak transcription	Colonic Mucosa	Colon
49	chr6:72087600-72088000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:72087600-72088000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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