The 2.0 version of rSNPBase

Variant report

Variant rs828641
Chromosome Location chr6:72079820-72079821
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:72061600-72097000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr6:72070200-72081400 Weak transcription Hela-S3 cervix
3 chr6:72071400-72085200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr6:72071600-72083600 Weak transcription Placenta Placenta
5 chr6:72075400-72087200 Weak transcription Fetal Heart heart
6 chr6:72076000-72083800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr6:72076000-72084000 Weak transcription Fetal Intestine Small intestine
8 chr6:72076000-72093400 Weak transcription Brain Hippocampus Middle brain
9 chr6:72076200-72083800 Weak transcription NH-A brain
10 chr6:72076200-72103200 Weak transcription Aorta Aorta
11 chr6:72076600-72080200 Weak transcription Osteobl bone
12 chr6:72076600-72080400 Weak transcription Liver Liver
13 chr6:72076600-72081000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr6:72076600-72081000 Weak transcription Fetal Lung lung
15 chr6:72076600-72083400 Weak transcription Adipose Nuclei Adipose
16 chr6:72076600-72087600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr6:72076600-72090200 Weak transcription Ovary ovary
18 chr6:72077000-72084000 Weak transcription Stomach Smooth Muscle stomach
19 chr6:72077200-72081800 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr6:72077400-72081200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr6:72077600-72080600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr6:72077600-72084000 Weak transcription Skeletal Muscle Male skeletal muscle
23 chr6:72077600-72085400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
24 chr6:72077600-72093400 Weak transcription Brain Anterior Caudate brain
25 chr6:72077600-72094800 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr6:72077800-72083800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr6:72077800-72087800 Weak transcription Right Ventricle heart
28 chr6:72077800-72088000 Weak transcription Left Ventricle heart
29 chr6:72077800-72093000 Weak transcription Lung lung
30 chr6:72077800-72093200 Weak transcription Pancreas Pancrea
31 chr6:72077800-72097000 Weak transcription Psoas Muscle Psoas
32 chr6:72077800-72097200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
33 chr6:72078000-72083800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr6:72078200-72080400 Weak transcription HSMMtube muscle
35 chr6:72078200-72081400 Weak transcription HUVEC blood vessel
36 chr6:72078200-72084000 Weak transcription NHDF-Ad bronchial
37 chr6:72078200-72095400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr6:72078400-72080400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr6:72078400-72083600 Weak transcription A549 lung
40 chr6:72078400-72083800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
41 chr6:72078600-72080400 Weak transcription HSMM muscle
42 chr6:72078600-72081200 Weak transcription Muscle Satellite Cultured Cells --
43 chr6:72078800-72080200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr6:72078800-72081200 Strong transcription Breast Myoepithelial Primary Cells Breast
45 chr6:72078800-72083800 Weak transcription NHEK skin
46 chr6:72079400-72082000 Strong transcription Cortex derived primary cultured neurospheres brain
47 chr6:72079400-72082400 Strong transcription HMEC breast
48 chr6:72079600-72082000 Strong transcription Fetal Kidney kidney
49 chr6:72079800-72082800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr6:72079800-72098800 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015