Variant report

Variant	rs11936844
Chromosome Location	chr4:88361025-88361026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88311663..88314102-chr4:88359641..88363442,4	K562	blood:

Variant related genes	Relation type
ENSG00000198189	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11936277	0.89[AFR][1000 genomes]
rs11936366	0.89[YRI][hapmap]
rs11936545	1.00[YRI][hapmap]
rs11938995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56074145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56760389	1.00[AMR][1000 genomes]
rs60276052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61129437	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6818444	0.87[YRI][hapmap]
rs6844206	0.89[YRI][hapmap]
rs73839650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839651	1.00[AMR][1000 genomes]
rs73839713	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839715	1.00[AMR][1000 genomes]
rs73839716	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839719	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88344400-88398600	Weak transcription	Gastric	stomach
2	chr4:88345200-88362800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:88345200-88363000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:88345200-88400000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:88345200-88416400	Weak transcription	Colonic Mucosa	Colon
6	chr4:88345400-88361400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:88345400-88363400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:88345400-88372400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:88345400-88378800	Weak transcription	A549	lung
10	chr4:88345800-88363400	Weak transcription	Right Ventricle	heart
11	chr4:88345800-88372200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:88346000-88363200	Weak transcription	Primary B cells from cord blood	blood
13	chr4:88346000-88364200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:88346200-88363200	Weak transcription	K562	blood
15	chr4:88346200-88370600	Weak transcription	Thymus	Thymus
16	chr4:88346200-88382600	Weak transcription	NHLF	lung
17	chr4:88346400-88362600	Weak transcription	Brain Substantia Nigra	brain
18	chr4:88346400-88366200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:88346400-88369600	Weak transcription	Right Atrium	heart
20	chr4:88346400-88372200	Weak transcription	Aorta	Aorta
21	chr4:88346400-88379400	Weak transcription	Small Intestine	intestine
22	chr4:88346600-88362800	Weak transcription	Osteobl	bone
23	chr4:88346600-88363800	Weak transcription	HMEC	breast
24	chr4:88346600-88371600	Weak transcription	Spleen	Spleen
25	chr4:88346600-88372200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:88346600-88410400	Weak transcription	Esophagus	oesophagus
27	chr4:88346800-88371400	Weak transcription	Lung	lung
28	chr4:88347200-88361400	Weak transcription	Ovary	ovary
29	chr4:88347200-88366000	Weak transcription	NH-A	brain
30	chr4:88347200-88372000	Weak transcription	NHEK	skin
31	chr4:88349000-88372400	Weak transcription	HSMMtube	muscle
32	chr4:88349000-88375400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr4:88349400-88381800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr4:88350600-88380600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr4:88351200-88379000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:88351400-88382400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr4:88351600-88414600	Weak transcription	Psoas Muscle	Psoas
38	chr4:88351800-88366600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr4:88352400-88362600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr4:88352600-88363000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr4:88352600-88387200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr4:88353000-88363800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr4:88353400-88377000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr4:88354800-88381600	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr4:88356000-88377600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr4:88356200-88361200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr4:88356200-88361600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:88356200-88365200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:88356200-88367400	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr4:88356200-88367600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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