Variant report

Variant	rs56074145
Chromosome Location	chr4:88357201-88357202
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88342347..88345109-chr4:88355579..88358193,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170502	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11936277	0.89[AFR][1000 genomes]
rs11936844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11938995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56760389	1.00[AMR][1000 genomes]
rs60276052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61129437	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839651	1.00[AMR][1000 genomes]
rs73839713	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839715	1.00[AMR][1000 genomes]
rs73839716	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839719	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88344400-88398600	Weak transcription	Gastric	stomach
2	chr4:88345200-88362800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:88345200-88363000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:88345200-88400000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:88345200-88416400	Weak transcription	Colonic Mucosa	Colon
6	chr4:88345400-88357600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:88345400-88359400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:88345400-88359400	Weak transcription	Fetal Thymus	thymus
9	chr4:88345400-88361400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:88345400-88363400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:88345400-88372400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:88345400-88378800	Weak transcription	A549	lung
13	chr4:88345800-88357400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr4:88345800-88360800	Weak transcription	Brain Anterior Caudate	brain
15	chr4:88345800-88363400	Weak transcription	Right Ventricle	heart
16	chr4:88345800-88372200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr4:88346000-88359400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:88346000-88359400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:88346000-88363200	Weak transcription	Primary B cells from cord blood	blood
20	chr4:88346000-88364200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr4:88346200-88359200	Weak transcription	NHDF-Ad	bronchial
22	chr4:88346200-88361000	Weak transcription	Colon Smooth Muscle	Colon
23	chr4:88346200-88363200	Weak transcription	K562	blood
24	chr4:88346200-88370600	Weak transcription	Thymus	Thymus
25	chr4:88346200-88382600	Weak transcription	NHLF	lung
26	chr4:88346400-88357400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:88346400-88362600	Weak transcription	Brain Substantia Nigra	brain
28	chr4:88346400-88366200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr4:88346400-88369600	Weak transcription	Right Atrium	heart
30	chr4:88346400-88372200	Weak transcription	Aorta	Aorta
31	chr4:88346400-88379400	Weak transcription	Small Intestine	intestine
32	chr4:88346600-88360000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:88346600-88360200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:88346600-88362800	Weak transcription	Osteobl	bone
35	chr4:88346600-88363800	Weak transcription	HMEC	breast
36	chr4:88346600-88371600	Weak transcription	Spleen	Spleen
37	chr4:88346600-88372200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr4:88346600-88410400	Weak transcription	Esophagus	oesophagus
39	chr4:88346800-88371400	Weak transcription	Lung	lung
40	chr4:88347200-88360000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:88347200-88361400	Weak transcription	Ovary	ovary
42	chr4:88347200-88366000	Weak transcription	NH-A	brain
43	chr4:88347200-88372000	Weak transcription	NHEK	skin
44	chr4:88349000-88359200	Weak transcription	HSMM	muscle
45	chr4:88349000-88372400	Weak transcription	HSMMtube	muscle
46	chr4:88349000-88375400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr4:88349400-88381800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr4:88350600-88380600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr4:88351200-88379000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr4:88351400-88360000	Weak transcription	Pancreas	Pancrea

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