Variant report

Variant	rs56760389
Chromosome Location	chr4:88379063-88379064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88345779..88348484-chr4:88376364..88379281,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11936844	1.00[AMR][1000 genomes]
rs11938995	1.00[AMR][1000 genomes]
rs56074145	1.00[AMR][1000 genomes]
rs60276052	1.00[AMR][1000 genomes]
rs61129437	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839650	1.00[AMR][1000 genomes]
rs73839651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839713	1.00[AMR][1000 genomes]
rs73839715	1.00[AMR][1000 genomes]
rs73839716	1.00[AMR][1000 genomes]
rs73839719	1.00[AMR][1000 genomes]
rs73839777	1.00[AMR][1000 genomes]
rs73839783	1.00[AMR][1000 genomes]
rs73839788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1011882	chr4:88363959-88402477	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88344400-88398600	Weak transcription	Gastric	stomach
2	chr4:88345200-88400000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:88345200-88416400	Weak transcription	Colonic Mucosa	Colon
4	chr4:88346200-88382600	Weak transcription	NHLF	lung
5	chr4:88346400-88379400	Weak transcription	Small Intestine	intestine
6	chr4:88346600-88410400	Weak transcription	Esophagus	oesophagus
7	chr4:88349400-88381800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:88350600-88380600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:88351400-88382400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr4:88351600-88414600	Weak transcription	Psoas Muscle	Psoas
11	chr4:88352600-88387200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:88354800-88381600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr4:88356600-88382000	Weak transcription	Brain Germinal Matrix	brain
14	chr4:88357600-88380000	Weak transcription	Brain Angular Gyrus	brain
15	chr4:88357800-88381600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:88359800-88382200	Weak transcription	Fetal Brain Female	brain
17	chr4:88360400-88381800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:88361200-88383000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr4:88363400-88380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:88364800-88382800	Weak transcription	HMEC	breast
21	chr4:88365000-88380800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:88365000-88403400	Weak transcription	Right Ventricle	heart
23	chr4:88365200-88381800	Weak transcription	HUVEC	blood vessel
24	chr4:88366000-88381400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr4:88366600-88382400	Weak transcription	Fetal Heart	heart
26	chr4:88367400-88380800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr4:88367400-88381600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr4:88370200-88380200	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr4:88371800-88381800	Weak transcription	Thymus	Thymus
30	chr4:88372600-88381000	Weak transcription	NHDF-Ad	bronchial
31	chr4:88372600-88382600	Weak transcription	NHEK	skin
32	chr4:88372600-88398800	Weak transcription	Lung	lung
33	chr4:88372800-88386400	Weak transcription	HSMM	muscle
34	chr4:88372800-88398800	Weak transcription	Brain Anterior Caudate	brain
35	chr4:88373000-88382000	Weak transcription	Hela-S3	cervix
36	chr4:88373800-88379400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr4:88373800-88380600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr4:88373800-88386200	Weak transcription	HSMMtube	muscle
39	chr4:88373800-88397000	Weak transcription	Aorta	Aorta
40	chr4:88373800-88397200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr4:88373800-88397600	Weak transcription	Brain Hippocampus Middle	brain
42	chr4:88373800-88409800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:88374000-88382400	Weak transcription	Osteobl	bone
44	chr4:88374000-88441000	Weak transcription	Spleen	Spleen
45	chr4:88374400-88382000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr4:88375000-88379200	Strong transcription	Fetal Muscle Trunk	muscle
47	chr4:88375400-88380600	Strong transcription	Primary B cells from peripheral blood	blood
48	chr4:88375600-88379400	Strong transcription	Placenta	Placenta
49	chr4:88375600-88381000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:88375800-88382000	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links