Variant report

Variant	rs73839715
Chromosome Location	chr4:88321706-88321707
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11936844	1.00[AMR][1000 genomes]
rs11938995	1.00[AMR][1000 genomes]
rs56074145	1.00[AMR][1000 genomes]
rs56760389	1.00[AMR][1000 genomes]
rs60276052	1.00[AMR][1000 genomes]
rs61129437	1.00[AMR][1000 genomes]
rs73839650	1.00[AMR][1000 genomes]
rs73839651	1.00[AMR][1000 genomes]
rs73839713	1.00[AMR][1000 genomes]
rs73839716	1.00[AMR][1000 genomes]
rs73839719	1.00[AMR][1000 genomes]
rs73839777	1.00[AMR][1000 genomes]
rs73839783	1.00[AMR][1000 genomes]
rs73839788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88320600-88329400	Weak transcription	Pancreas	Pancrea
2	chr4:88320800-88322000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:88321000-88327400	Weak transcription	Primary B cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links