Variant report

Variant	rs73839713
Chromosome Location	chr4:88320741-88320742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11936277	0.90[AFR][1000 genomes]
rs11936844	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11938995	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56074145	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56760389	1.00[AMR][1000 genomes]
rs60276052	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61129437	1.00[AMR][1000 genomes]
rs73839650	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839651	1.00[AMR][1000 genomes]
rs73839715	1.00[AMR][1000 genomes]
rs73839716	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839719	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839777	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839783	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839788	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88313200-88320800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:88320400-88321200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:88320600-88321000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr4:88320600-88329400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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