Variant report

Variant	rs73839650
Chromosome Location	chr4:88382633-88382634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11936277	0.89[AFR][1000 genomes]
rs11936844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11938995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56074145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56760389	1.00[AMR][1000 genomes]
rs60276052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61129437	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839651	1.00[AMR][1000 genomes]
rs73839713	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839715	1.00[AMR][1000 genomes]
rs73839716	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839719	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1011882	chr4:88363959-88402477	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88344400-88398600	Weak transcription	Gastric	stomach
2	chr4:88345200-88400000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:88345200-88416400	Weak transcription	Colonic Mucosa	Colon
4	chr4:88346600-88410400	Weak transcription	Esophagus	oesophagus
5	chr4:88351600-88414600	Weak transcription	Psoas Muscle	Psoas
6	chr4:88352600-88387200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:88361200-88383000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:88364800-88382800	Weak transcription	HMEC	breast
9	chr4:88365000-88403400	Weak transcription	Right Ventricle	heart
10	chr4:88372600-88398800	Weak transcription	Lung	lung
11	chr4:88372800-88386400	Weak transcription	HSMM	muscle
12	chr4:88372800-88398800	Weak transcription	Brain Anterior Caudate	brain
13	chr4:88373800-88386200	Weak transcription	HSMMtube	muscle
14	chr4:88373800-88397000	Weak transcription	Aorta	Aorta
15	chr4:88373800-88397200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:88373800-88397600	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:88373800-88409800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:88374000-88441000	Weak transcription	Spleen	Spleen
19	chr4:88375800-88409400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:88376200-88398200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:88378000-88410400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:88379200-88394600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr4:88379400-88387200	Weak transcription	Placenta	Placenta
24	chr4:88379400-88393800	Weak transcription	Left Ventricle	heart
25	chr4:88379600-88398200	Weak transcription	Fetal Stomach	stomach
26	chr4:88379600-88409400	Weak transcription	Fetal Intestine Small	intestine
27	chr4:88379800-88396000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:88380200-88382800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:88380200-88386400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr4:88380200-88386800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:88380400-88382800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:88380400-88383000	Weak transcription	Primary B cells from cord blood	blood
33	chr4:88380400-88383200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr4:88380400-88386800	Weak transcription	Fetal Kidney	kidney
35	chr4:88380400-88388800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr4:88380400-88388800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr4:88380400-88394200	Weak transcription	Fetal Lung	lung
38	chr4:88380400-88394400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr4:88380400-88397000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr4:88380400-88397600	Weak transcription	Colon Smooth Muscle	Colon
41	chr4:88380400-88398800	Weak transcription	Brain Substantia Nigra	brain
42	chr4:88380400-88402400	Weak transcription	Liver	Liver
43	chr4:88380400-88410000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr4:88380400-88419600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr4:88380600-88383000	Weak transcription	NH-A	brain
46	chr4:88380600-88385800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:88380600-88387800	Weak transcription	Pancreas	Pancrea
48	chr4:88380600-88390800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr4:88380600-88394200	Weak transcription	Adipose Nuclei	Adipose
50	chr4:88380600-88396200	Weak transcription	Fetal Muscle Leg	muscle

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