Variant report

Variant	rs61129437
Chromosome Location	chr4:88376974-88376975
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88342819..88344465-chr4:88375784..88377431,2	MCF-7	breast:
2	chr4:88345779..88348484-chr4:88376364..88379281,2	K562	blood:

Variant related genes	Relation type
ENSG00000170502	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11936277	0.80[AFR][1000 genomes]
rs11936844	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11938995	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56074145	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56760389	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60276052	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839650	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839651	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839713	1.00[AMR][1000 genomes]
rs73839715	1.00[AMR][1000 genomes]
rs73839716	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839719	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839777	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839783	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839788	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1011882	chr4:88363959-88402477	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88344400-88398600	Weak transcription	Gastric	stomach
2	chr4:88345200-88400000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:88345200-88416400	Weak transcription	Colonic Mucosa	Colon
4	chr4:88345400-88378800	Weak transcription	A549	lung
5	chr4:88346200-88382600	Weak transcription	NHLF	lung
6	chr4:88346400-88379400	Weak transcription	Small Intestine	intestine
7	chr4:88346600-88410400	Weak transcription	Esophagus	oesophagus
8	chr4:88349400-88381800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:88350600-88380600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:88351200-88379000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:88351400-88382400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:88351600-88414600	Weak transcription	Psoas Muscle	Psoas
13	chr4:88352600-88387200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:88353400-88377000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:88354800-88381600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:88356000-88377600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:88356400-88377200	Weak transcription	Fetal Brain Male	brain
18	chr4:88356600-88382000	Weak transcription	Brain Germinal Matrix	brain
19	chr4:88357600-88380000	Weak transcription	Brain Angular Gyrus	brain
20	chr4:88357800-88381600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr4:88359800-88382200	Weak transcription	Fetal Brain Female	brain
22	chr4:88360400-88381800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:88361200-88383000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr4:88363400-88380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:88364400-88377400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr4:88364400-88379000	Weak transcription	Brain Substantia Nigra	brain
27	chr4:88364800-88377400	Weak transcription	HepG2	liver
28	chr4:88364800-88382800	Weak transcription	HMEC	breast
29	chr4:88365000-88380800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr4:88365000-88403400	Weak transcription	Right Ventricle	heart
31	chr4:88365200-88381800	Weak transcription	HUVEC	blood vessel
32	chr4:88366000-88381400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr4:88366600-88379000	Weak transcription	Fetal Kidney	kidney
34	chr4:88366600-88382400	Weak transcription	Fetal Heart	heart
35	chr4:88367400-88380800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr4:88367400-88381600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr4:88367800-88377400	Weak transcription	Pancreas	Pancrea
38	chr4:88370200-88380200	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr4:88371800-88377400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:88371800-88377600	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr4:88371800-88377800	Strong transcription	Dnd41	blood
42	chr4:88371800-88381800	Weak transcription	Thymus	Thymus
43	chr4:88372200-88377600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr4:88372600-88379000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr4:88372600-88379000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr4:88372600-88379000	Weak transcription	K562	blood
47	chr4:88372600-88381000	Weak transcription	NHDF-Ad	bronchial
48	chr4:88372600-88382600	Weak transcription	NHEK	skin
49	chr4:88372600-88398800	Weak transcription	Lung	lung
50	chr4:88372800-88379000	Weak transcription	Rectal Mucosa Donor 31	rectum

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