Variant report

Variant	rs11954566
Chromosome Location	chr5:36503827-36503828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36499725..36501562-chr5:36503562..36506280,2	MCF-7	breast:
2	chr5:36498212..36500819-chr5:36503623..36505516,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10053299	1.00[EUR][1000 genomes]
rs10054009	1.00[EUR][1000 genomes]
rs10056349	1.00[EUR][1000 genomes]
rs10056352	1.00[EUR][1000 genomes]
rs10056466	1.00[EUR][1000 genomes]
rs10058111	1.00[EUR][1000 genomes]
rs10058115	1.00[EUR][1000 genomes]
rs10058314	1.00[EUR][1000 genomes]
rs10058422	1.00[EUR][1000 genomes]
rs10058564	1.00[EUR][1000 genomes]
rs10061999	1.00[EUR][1000 genomes]
rs10073164	1.00[EUR][1000 genomes]
rs10073279	1.00[EUR][1000 genomes]
rs10077206	1.00[EUR][1000 genomes]
rs10077918	1.00[EUR][1000 genomes]
rs10079668	1.00[EUR][1000 genomes]
rs10085047	1.00[EUR][1000 genomes]
rs10085102	1.00[EUR][1000 genomes]
rs13354988	1.00[EUR][1000 genomes]
rs16903262	1.00[AMR][1000 genomes]
rs28376702	1.00[EUR][1000 genomes]
rs28479598	1.00[EUR][1000 genomes]
rs28505610	1.00[EUR][1000 genomes]
rs28523559	1.00[EUR][1000 genomes]
rs28647761	1.00[EUR][1000 genomes]
rs56288606	1.00[EUR][1000 genomes]
rs57097362	1.00[EUR][1000 genomes]
rs57336573	1.00[EUR][1000 genomes]
rs58556892	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59457338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60250007	1.00[AMR][1000 genomes]
rs60852665	1.00[AMR][1000 genomes]
rs60856949	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61246645	1.00[EUR][1000 genomes]
rs61448540	1.00[EUR][1000 genomes]
rs6861244	1.00[AMR][1000 genomes]
rs6890988	1.00[AMR][1000 genomes]
rs73089639	1.00[AMR][1000 genomes]
rs73089649	1.00[AMR][1000 genomes]
rs73089650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089653	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089667	1.00[EUR][1000 genomes]
rs73089669	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089699	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089701	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091531	1.00[AMR][1000 genomes]
rs7703416	1.00[AMR][1000 genomes]
rs7703852	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36501800-36504000	Enhancers	HMEC	breast
2	chr5:36501800-36504200	Enhancers	HSMMtube	muscle
3	chr5:36501800-36504600	Enhancers	HSMM	muscle
4	chr5:36501800-36506000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:36502000-36504000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:36502000-36504000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr5:36502000-36504000	Enhancers	NH-A	brain
8	chr5:36502000-36504200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:36502000-36504400	Enhancers	NHDF-Ad	bronchial
10	chr5:36502000-36504400	Enhancers	Osteobl	bone
11	chr5:36502200-36504600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:36502200-36504600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:36502400-36504200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:36502600-36504600	Enhancers	Adipose Nuclei	Adipose
15	chr5:36502800-36504400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:36503000-36505000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:36503200-36504000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:36503200-36504800	Weak transcription	Colon Smooth Muscle	Colon
19	chr5:36503200-36505600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:36503200-36507600	Weak transcription	NHEK	skin
21	chr5:36503400-36504200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:36503400-36505400	Enhancers	Hela-S3	cervix
23	chr5:36503600-36504400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr5:36503600-36504400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr5:36503800-36504000	Enhancers	Stomach Smooth Muscle	stomach
26	chr5:36503800-36504400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr5:36503800-36504600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr5:36503800-36505200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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