Variant report

Variant	rs73089699
Chromosome Location	chr5:36507232-36507233
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:36414161..36415558-chr5:36507119..36508035,4	MCF-7	breast:
2	chr5:36414583..36415587-chr5:36506983..36508090,7	K562	blood:
3	chr5:36500289..36503797-chr5:36504246..36507630,3	K562	blood:
4	chr5:36507187..36508089-chr5:36692700..36694128,7	MCF-7	breast:
5	chr5:36412717..36413437-chr5:36507212..36508126,2	K562	blood:
6	chr5:36079366..36080125-chr5:36507043..36508002,2	K562	blood:
7	chr5:36415574..36416124-chr5:36507070..36507980,2	MCF-7	breast:
8	chr5:36265104..36265888-chr5:36507183..36507807,2	K562	blood:

No data

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10053299	1.00[EUR][1000 genomes]
rs10054009	1.00[EUR][1000 genomes]
rs10056349	1.00[EUR][1000 genomes]
rs10056352	1.00[EUR][1000 genomes]
rs10056466	1.00[EUR][1000 genomes]
rs10058111	1.00[EUR][1000 genomes]
rs10058115	1.00[EUR][1000 genomes]
rs10058314	1.00[EUR][1000 genomes]
rs10058422	1.00[EUR][1000 genomes]
rs10058564	1.00[EUR][1000 genomes]
rs10061999	1.00[EUR][1000 genomes]
rs10073164	1.00[EUR][1000 genomes]
rs10073279	1.00[EUR][1000 genomes]
rs10077206	1.00[EUR][1000 genomes]
rs10077918	1.00[EUR][1000 genomes]
rs10079668	1.00[EUR][1000 genomes]
rs10085047	1.00[EUR][1000 genomes]
rs10085102	1.00[EUR][1000 genomes]
rs11954566	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13354988	1.00[EUR][1000 genomes]
rs16903262	1.00[AMR][1000 genomes]
rs28376702	1.00[EUR][1000 genomes]
rs28479598	1.00[EUR][1000 genomes]
rs28505610	1.00[EUR][1000 genomes]
rs28523559	1.00[EUR][1000 genomes]
rs28647761	1.00[EUR][1000 genomes]
rs56288606	1.00[EUR][1000 genomes]
rs57097362	1.00[EUR][1000 genomes]
rs57336573	1.00[EUR][1000 genomes]
rs58556892	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59457338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60250007	1.00[AMR][1000 genomes]
rs60852665	1.00[AMR][1000 genomes]
rs60856949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61246645	1.00[EUR][1000 genomes]
rs61448540	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6861244	1.00[AMR][1000 genomes]
rs6890988	1.00[AMR][1000 genomes]
rs73089639	1.00[AMR][1000 genomes]
rs73089649	1.00[AMR][1000 genomes]
rs73089650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089653	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089667	1.00[EUR][1000 genomes]
rs73089669	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091531	1.00[AMR][1000 genomes]
rs7703416	1.00[AMR][1000 genomes]
rs7703852	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36503200-36507600	Weak transcription	NHEK	skin
2	chr5:36504000-36507600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:36504400-36508400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:36505400-36507600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:36505400-36507800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:36505400-36508400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:36507200-36508000	Enhancers	Hela-S3	cervix
8	chr5:36507200-36508600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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