Variant report

Variant	rs59457338
Chromosome Location	chr5:36501483-36501484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36500289..36503797-chr5:36504246..36507630,3	K562	blood:
2	chr5:36499725..36501562-chr5:36503562..36506280,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10053299	1.00[EUR][1000 genomes]
rs10054009	1.00[EUR][1000 genomes]
rs10056349	1.00[EUR][1000 genomes]
rs10056352	1.00[EUR][1000 genomes]
rs10056466	1.00[EUR][1000 genomes]
rs10058111	1.00[EUR][1000 genomes]
rs10058115	1.00[EUR][1000 genomes]
rs10058314	1.00[EUR][1000 genomes]
rs10058422	1.00[EUR][1000 genomes]
rs10058564	1.00[EUR][1000 genomes]
rs10061999	1.00[EUR][1000 genomes]
rs10073164	1.00[EUR][1000 genomes]
rs10073279	1.00[EUR][1000 genomes]
rs10077206	1.00[EUR][1000 genomes]
rs10077918	1.00[EUR][1000 genomes]
rs10079668	1.00[EUR][1000 genomes]
rs10085047	1.00[EUR][1000 genomes]
rs10085102	1.00[EUR][1000 genomes]
rs11954566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13354988	1.00[EUR][1000 genomes]
rs16903262	1.00[AMR][1000 genomes]
rs28376702	1.00[EUR][1000 genomes]
rs28479598	1.00[EUR][1000 genomes]
rs28505610	1.00[EUR][1000 genomes]
rs28523559	1.00[EUR][1000 genomes]
rs28647761	1.00[EUR][1000 genomes]
rs56288606	1.00[EUR][1000 genomes]
rs57097362	1.00[EUR][1000 genomes]
rs57336573	1.00[EUR][1000 genomes]
rs58556892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60250007	1.00[AMR][1000 genomes]
rs60852665	1.00[AMR][1000 genomes]
rs60856949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61246645	1.00[EUR][1000 genomes]
rs61448540	1.00[EUR][1000 genomes]
rs6861244	1.00[AMR][1000 genomes]
rs6890988	1.00[AMR][1000 genomes]
rs73089639	1.00[AMR][1000 genomes]
rs73089649	1.00[AMR][1000 genomes]
rs73089650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089661	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089667	1.00[EUR][1000 genomes]
rs73089669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091531	1.00[AMR][1000 genomes]
rs7703416	1.00[AMR][1000 genomes]
rs7703852	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36496000-36502200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:36496000-36502800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:36496200-36501800	Weak transcription	Hela-S3	cervix
4	chr5:36497600-36502400	Weak transcription	Brain Anterior Caudate	brain
5	chr5:36499800-36502200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:36499800-36503600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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