Variant report

Variant	rs28479598
Chromosome Location	chr5:36451200-36451201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10053299	1.00[EUR][1000 genomes]
rs10054009	1.00[EUR][1000 genomes]
rs10056349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10056352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10056466	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10058111	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10058115	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10058314	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10058422	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10058564	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10061999	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10064305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10067251	1.00[AMR][1000 genomes]
rs10070419	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10073164	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10073279	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10077206	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10077918	1.00[EUR][1000 genomes]
rs10079668	1.00[EUR][1000 genomes]
rs10085047	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10085102	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11954566	1.00[EUR][1000 genomes]
rs13354988	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13359394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28376702	1.00[EUR][1000 genomes]
rs28505610	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523559	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28647761	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56288606	1.00[EUR][1000 genomes]
rs57097362	1.00[EUR][1000 genomes]
rs57336573	1.00[EUR][1000 genomes]
rs58556892	1.00[EUR][1000 genomes]
rs59457338	1.00[EUR][1000 genomes]
rs60856949	1.00[EUR][1000 genomes]
rs61246645	1.00[EUR][1000 genomes]
rs61448540	1.00[EUR][1000 genomes]
rs73089650	1.00[EUR][1000 genomes]
rs73089652	1.00[EUR][1000 genomes]
rs73089653	1.00[EUR][1000 genomes]
rs73089661	1.00[EUR][1000 genomes]
rs73089667	1.00[EUR][1000 genomes]
rs73089669	1.00[EUR][1000 genomes]
rs73089699	1.00[EUR][1000 genomes]
rs73089701	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597817	chr5:36433782-36460075	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv597818	chr5:36440940-36460462	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv597819	chr5:36445458-36472990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1023545	chr5:36448895-36461331	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1016667	chr5:36448895-36464362	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2763449	chr5:36448895-36464374	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36444400-36451800	Weak transcription	Fetal Kidney	kidney
2	chr5:36445800-36452400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:36445800-36462800	Weak transcription	Esophagus	oesophagus
4	chr5:36446400-36452000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:36446600-36452400	Weak transcription	Placenta	Placenta
6	chr5:36448000-36452600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:36448000-36453800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:36449200-36452200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:36449200-36452800	Enhancers	HMEC	breast
10	chr5:36449800-36451200	Enhancers	Stomach Mucosa	stomach
11	chr5:36449800-36453800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:36450200-36451200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:36450200-36453600	Enhancers	Hela-S3	cervix
14	chr5:36450400-36451200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr5:36450400-36451200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:36450400-36452000	Enhancers	Osteobl	bone
17	chr5:36450400-36452800	Enhancers	HSMM	muscle
18	chr5:36450600-36451600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:36450600-36456800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:36451000-36451200	Flanking Active TSS	NHEK	skin
21	chr5:36451000-36451800	Enhancers	HSMMtube	muscle
22	chr5:36451000-36452000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:36451200-36452600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:36451200-36452600	Enhancers	NHEK	skin

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