Variant report
| Variant | rs28376702 |
|---|---|
| Chromosome Location | chr5:36580895-36580896 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10053299 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10054009 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10056349 | 1.00[EUR][1000 genomes] |
| rs10056352 | 1.00[EUR][1000 genomes] |
| rs10056466 | 1.00[EUR][1000 genomes] |
| rs10058111 | 1.00[EUR][1000 genomes] |
| rs10058115 | 1.00[EUR][1000 genomes] |
| rs10058314 | 1.00[EUR][1000 genomes] |
| rs10058422 | 1.00[EUR][1000 genomes] |
| rs10058564 | 1.00[EUR][1000 genomes] |
| rs10061999 | 1.00[EUR][1000 genomes] |
| rs10073164 | 1.00[EUR][1000 genomes] |
| rs10073279 | 1.00[EUR][1000 genomes] |
| rs10077206 | 1.00[EUR][1000 genomes] |
| rs10077918 | 1.00[EUR][1000 genomes] |
| rs10079668 | 1.00[EUR][1000 genomes] |
| rs10085047 | 1.00[EUR][1000 genomes] |
| rs10085102 | 1.00[EUR][1000 genomes] |
| rs11954566 | 1.00[EUR][1000 genomes] |
| rs13354988 | 1.00[EUR][1000 genomes] |
| rs1366635 | 0.80[AFR][1000 genomes] |
| rs28479598 | 1.00[EUR][1000 genomes] |
| rs28505610 | 1.00[EUR][1000 genomes] |
| rs28523559 | 1.00[EUR][1000 genomes] |
| rs28647761 | 1.00[EUR][1000 genomes] |
| rs56288606 | 1.00[EUR][1000 genomes] |
| rs57097362 | 1.00[EUR][1000 genomes] |
| rs57336573 | 1.00[EUR][1000 genomes] |
| rs58556892 | 1.00[EUR][1000 genomes] |
| rs59457338 | 1.00[EUR][1000 genomes] |
| rs60856949 | 1.00[EUR][1000 genomes] |
| rs61246645 | 1.00[EUR][1000 genomes] |
| rs61448540 | 1.00[EUR][1000 genomes] |
| rs73089650 | 1.00[EUR][1000 genomes] |
| rs73089652 | 1.00[EUR][1000 genomes] |
| rs73089653 | 1.00[EUR][1000 genomes] |
| rs73089661 | 1.00[EUR][1000 genomes] |
| rs73089667 | 1.00[EUR][1000 genomes] |
| rs73089669 | 1.00[EUR][1000 genomes] |
| rs73089699 | 1.00[EUR][1000 genomes] |
| rs73089701 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv492319 | chr5:36570707-37061019 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| 2 | nsv881025 | chr5:36575021-36613053 | Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv830263 | chr5:36576504-36755093 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:36571200-36584000 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 2 | chr5:36571200-36584000 | Weak transcription | Brain Substantia Nigra | brain |
