Variant report

Variant	rs10053299
Chromosome Location	chr5:36575173-36575174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10054009	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10056349	1.00[EUR][1000 genomes]
rs10056352	1.00[EUR][1000 genomes]
rs10056466	1.00[EUR][1000 genomes]
rs10058111	1.00[EUR][1000 genomes]
rs10058115	1.00[EUR][1000 genomes]
rs10058314	1.00[EUR][1000 genomes]
rs10058422	1.00[EUR][1000 genomes]
rs10058564	1.00[EUR][1000 genomes]
rs10061999	1.00[EUR][1000 genomes]
rs10073164	1.00[EUR][1000 genomes]
rs10073279	1.00[EUR][1000 genomes]
rs10077206	1.00[EUR][1000 genomes]
rs10077918	1.00[EUR][1000 genomes]
rs10079668	1.00[EUR][1000 genomes]
rs10080178	1.00[MEX][hapmap]
rs10085047	1.00[EUR][1000 genomes]
rs10085102	1.00[EUR][1000 genomes]
rs10473036	1.00[MEX][hapmap]
rs11954566	1.00[EUR][1000 genomes]
rs13354988	1.00[EUR][1000 genomes]
rs2301064	1.00[MEX][hapmap]
rs28376702	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28479598	1.00[EUR][1000 genomes]
rs28505610	1.00[EUR][1000 genomes]
rs28523559	1.00[EUR][1000 genomes]
rs28647761	1.00[EUR][1000 genomes]
rs3753180	1.00[MEX][hapmap]
rs56288606	1.00[EUR][1000 genomes]
rs57097362	1.00[EUR][1000 genomes]
rs57336573	1.00[EUR][1000 genomes]
rs58556892	1.00[EUR][1000 genomes]
rs59457338	1.00[EUR][1000 genomes]
rs60856949	1.00[EUR][1000 genomes]
rs61246645	1.00[EUR][1000 genomes]
rs61448540	1.00[EUR][1000 genomes]
rs6860851	1.00[MEX][hapmap]
rs73089650	1.00[EUR][1000 genomes]
rs73089652	1.00[EUR][1000 genomes]
rs73089653	1.00[EUR][1000 genomes]
rs73089661	1.00[EUR][1000 genomes]
rs73089667	1.00[EUR][1000 genomes]
rs73089669	1.00[EUR][1000 genomes]
rs73089699	1.00[EUR][1000 genomes]
rs73089701	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv881025	chr5:36575021-36613053	Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36570000-36575600	Weak transcription	Aorta	Aorta
2	chr5:36571000-36575200	Weak transcription	Fetal Heart	heart
3	chr5:36571200-36584000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:36571200-36584000	Weak transcription	Brain Substantia Nigra	brain
5	chr5:36571600-36577200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:36571800-36575200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:36572200-36575200	Weak transcription	Left Ventricle	heart
8	chr5:36572200-36575600	Weak transcription	Ovary	ovary
9	chr5:36572800-36575200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:36572800-36575600	Enhancers	HSMM	muscle
11	chr5:36572800-36576200	Enhancers	HMEC	breast
12	chr5:36573000-36575400	Enhancers	NH-A	brain
13	chr5:36573000-36577400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:36573200-36575200	Enhancers	HUVEC	blood vessel
15	chr5:36573200-36575400	Enhancers	NHEK	skin
16	chr5:36573200-36575800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:36573200-36575800	Enhancers	HSMMtube	muscle
18	chr5:36573200-36577400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:36573800-36575400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:36573800-36575400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:36573800-36575400	Weak transcription	NHLF	lung
22	chr5:36574000-36575200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:36574000-36575200	Weak transcription	Hela-S3	cervix
24	chr5:36574000-36575400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:36574000-36575400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr5:36574000-36575400	Weak transcription	NHDF-Ad	bronchial
27	chr5:36574000-36575600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:36574200-36575600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr5:36574200-36575600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr5:36574600-36575600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr5:36574800-36575600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr5:36574800-36575600	Enhancers	Spleen	Spleen
33	chr5:36574800-36575800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:36575000-36575800	Enhancers	Osteobl	bone
35	chr5:36575000-36576000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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