Variant report

Variant	rs11962004
Chromosome Location	chr6:29528616-29528617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:41399363..41401698-chr6:29527999..29529519,2	K562	blood:
2	chr17:41464180..41467868-chr6:29527999..29530999,6	K562	blood:
3	chr17:41391927..41394445-chr6:29528019..29529519,2	K562	blood:
4	chr3:73159072..73161621-chr6:29527999..29530999,8	K562	blood:
5	chr11:62607697..62609203-chr6:29528019..29529519,2	K562	blood:
6	chr3:73159072..73161626-chr6:29527999..29530999,7	K562	blood:
7	chr13:90583688..90585209-chr6:29527999..29529519,2	K562	blood:
8	chr17:41380915..41383268-chr6:29527999..29529519,2	K562	blood:
9	chr11:62607620..62609203-chr6:29528019..29529519,2	K562	blood:
10	chr17:41464362..41467656-chr6:29527999..29529519,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000223247	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000236383	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10484548	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961013	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964095	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11966844	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177823	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs29264	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3025660	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3025667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362539	1.00[ASN][1000 genomes]
rs362541	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362543	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55866912	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56098084	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58349531	0.81[EUR][1000 genomes]
rs60695064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61538888	1.00[ASN][1000 genomes]
rs61732184	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61732185	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6912636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934884	0.81[EUR][1000 genomes]
rs6935895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400921	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73401000	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402766	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403363	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403367	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403369	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403375	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73404743	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73404745	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73404772	0.81[EUR][1000 genomes]
rs7752486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757269	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461531	1.00[EUR][1000 genomes]
rs9461532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461533	1.00[EUR][1000 genomes]
rs9468546	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468547	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468559	0.90[ASN][1000 genomes]
rs9501676	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv5239	chr6:29527407-29566446	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29528000-29529000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:29528000-29530000	Enhancers	GM12878-XiMat	blood
3	chr6:29528000-29530000	Enhancers	HepG2	liver
4	chr6:29528200-29529000	Enhancers	Liver	Liver

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