Variant report

Variant	rs7757269
Chromosome Location	chr6:29396217-29396218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29396182-29396232	SKMC	muscle:	n/a
2	chr6:29396182-29396232	IMR90	lung:	fetal
3	chr6:29396182-29396232	SK-N-SH_RA	brain:	n/a
4	chr6:29396182-29396232	HAEpiC	amniotic membrane:	n/a
5	chr6:29396182-29396232	HCM	heart:	n/a
6	chr6:29396182-29396232	GM12878	blood:	n/a
7	chr6:29396182-29396232	NT2-D1	testis:	n/a
8	chr6:29396182-29396232	NB4	blood:	n/a
9	chr6:29396182-29396232	HEEpiC	esophagus:	n/a
10	chr6:29396182-29396232	BE2_C	brain:	n/a
11	chr6:29396182-29396232	HRCEpiC	kidney:	n/a
12	chr6:29396182-29396232	GM12891	blood:	n/a
13	chr6:29396182-29396232	SK-N-MC	brain:	n/a
14	chr6:29396182-29396232	ProgFib	skin:	n/a
15	chr6:29396182-29396232	A549	lung:	n/a
16	chr6:29396182-29396232	PFSK-1	brain:	n/a
17	chr6:29396182-29396232	NHDF-neo	bronchial:	n/a
18	chr6:29396182-29396232	HRPEpiC	eye:	n/a
19	chr6:29396182-29396232	MCF-7	breast:	n/a
20	chr6:29396182-29396232	HPAEpiC	pulmonary alveolar:	n/a
21	chr6:29396182-29396232	GM19239	blood:	n/a
22	chr6:29396182-29396232	AoSMC	blood vessel:	n/a
23	chr6:29396182-29396232	U87	brain:	n/a
24	chr6:29396182-29396232	Jurkat	blood:	n/a
25	chr6:29396182-29396232	MCF10A-Er-Src	breast:	n/a
26	chr6:29396182-29396232	K562	blood:	n/a
27	chr6:29396182-29396232	HIPEpiC	eye:	n/a
28	chr6:29396182-29396232	SK-N-SH	brain:	n/a
29	chr6:29396182-29396232	AG09319	gingival:	n/a
30	chr6:29396182-29396232	HMEC	breast:	n/a
31	chr6:29396182-29396232	HUVEC	blood vessel:	n/a
32	chr6:29396182-29396232	AG09309	skin:	n/a
33	chr6:29396182-29396232	AG04449	skin:	fetal
34	chr6:29396182-29396232	Caco-2	colon:	n/a
35	chr6:29396182-29396232	HL-60	blood:	n/a
36	chr6:29396182-29396232	AG10803	skin:	n/a
37	chr6:29396182-29396232	LNCaP	prostate:	n/a
38	chr6:29396182-29396232	HCT-116	colon:	n/a
39	chr6:29396182-29396232	AG04450	lung:	fetal
40	chr6:29396182-29396232	PANC-1	pancreas:	n/a
41	chr6:29396182-29396232	PrEC	prostate:	n/a
42	chr6:29396182-29396232	H1-hESC	embryonic stem cell:	embryo
43	chr6:29396182-29396232	ECC-1	luminal epithelium:	n/a
44	chr6:29396182-29396232	HEK293	kidney:	embryo
45	chr6:29396182-29396232	Hepatocyte	liver:	n/a
46	chr6:29396182-29396232	CMK	blood:	n/a
47	chr6:29396182-29396232	NHBE	bronchial:	n/a
48	chr6:29396182-29396232	Hela-S3	cervix:	n/a
49	chr6:29396182-29396232	HRE	kidney:	n/a
50	chr6:29396182-29396232	SAEC	small airway:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAS1L-3	chr6:29395992-29396243	NONHSAT108518

No data

Variant related genes	Relation type
OR11A1	CpG island

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10484548	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11961013	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11962004	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11964095	0.91[EUR][1000 genomes]
rs11966844	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17177823	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3025660	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3025667	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362539	0.90[ASN][1000 genomes]
rs362541	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362542	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362543	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55866912	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56098084	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60695064	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61538888	0.90[ASN][1000 genomes]
rs61732184	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61732185	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912636	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6935895	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73400921	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73401000	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73402766	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73402774	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403336	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403338	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403367	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403369	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73404743	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73404745	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73409596	1.00[ASN][1000 genomes]
rs7752486	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7761746	0.83[ASN][1000 genomes]
rs9461531	0.91[EUR][1000 genomes]
rs9461532	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461533	0.91[EUR][1000 genomes]
rs9468546	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468547	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468550	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468559	0.81[ASN][1000 genomes]
rs9501676	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv965635	chr6:29395355-29402762	Enhancers Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29392600-29399800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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