Variant report

Variant	rs73403336
Chromosome Location	chr6:29362482-29362483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29332977..29335770-chr6:29360286..29362629,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10484548	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11961013	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11964095	1.00[EUR][1000 genomes]
rs11966844	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11966876	0.81[EUR][1000 genomes]
rs17177823	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3025660	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3025667	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362539	0.90[ASN][1000 genomes]
rs362541	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362542	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362543	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55866912	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56098084	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60695064	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61538888	0.90[ASN][1000 genomes]
rs61732184	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61732185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912636	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6935895	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73400921	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73401000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73402766	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73402774	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403338	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403363	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403367	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403369	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403375	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409596	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752486	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7757269	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761746	0.83[ASN][1000 genomes]
rs9461531	1.00[EUR][1000 genomes]
rs9461532	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461533	1.00[EUR][1000 genomes]
rs9468546	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468547	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468550	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9501676	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018937	chr6:28956136-29366175	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv966676	chr6:29326915-29365789	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv601225	chr6:29355148-29370285	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv601226	chr6:29356046-29370285	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv601227	chr6:29356331-29370285	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29362000-29363000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:29362400-29363000	Enhancers	HUES48 Cell Line	embryonic stem cell

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